Paper

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Molecular Ensemble Development Research
  1. M. M. Khan, S. Simizu, T. Suzuki, A. Masuda, M. Kawatani, M. Muroi, N. Dohmae, and H. Osada
    "Protein Disulfide Isomerase-Mediated Disulfide Bonds Regulate the Gelatinolytic Activity and Secretion of Matrix Metalloproteinase-9"
    Exp. Cell Res., 318, 904-914 (2012).

  2. H. Osada, M. Muroi, and M. Yoshida
    "The Chemistry/Biology Interface"
    Bioorg. Med. Chem., 20, 1844-1845 (2012).

  3. T. Li, M. Nishiura, J. Cheng, Y. Li, and Z. Hou
    "M4(CH2)4 Cubane-Type Rare-Earth Methylidene Complexes: Unique Reactivity toward Unsaturated C-O, C-N, and C-S Bonds"
    Chem. Eur. J., 18, 15079-15085 (2012).

  4. J. Cheng, H. Wang, M. Nishiura, and Z. Hou
    "Binuclear Rare-Earth Polyhydride Complexes Bearing Both Terminal and Bridging Hydride Ligands"
    Chem. Sci., 3, 2230-2233 (2012).

  5. J. Cheng and Z. Hou
    "Cationic Terminal Hydrido Rare Earth Complexes Bearing an Amidinate Ancillary Ligand"
    Chem. Commun., 48, 814-816 (2012).

  6. V. K. Rai, M. Nishiura, M. Takimoto, S. Zhao, Y. Liu, and Z. Hou
    "Bis-Cyclometalated Iridium(III) Complexes Bearing Ancillary Guanidinate Ligands. Synthesis, Structure, and Highly Efficient Electroluminescence"
    Inorg. Chem., 51, 822-835 (2012).

Molecular Ensemble Analysis Research
  1. Y. Matsumoto, T. Tosha, A. V. Pisliakov, T. Hino, H. Sugimoto, S. Nagano, Y. Sugita, and Y. Shiro
    "Crystal Structure of Quinol-Dependent Nitric Oxide Reductase from Geobacillus Stearothermophilus"
    Nat. Strl. Mol. Biol., 19, 238-245 (2012).

  2. A. V. Pisliakov, T. Hino, Y. Shiro, and Y. Sugita
    "Molecular Dynamic Simulations Reveal Proton Transfer Pathways in Cytochrome C-Dependent Nitric Oxide Reductase"
    POLS Comp. Biol., 8, e1002674 (2012).

  3. H. Sawai, H. Sugimoto, Y. Shiro, H. Ishikawa, Y. Mizutani, and S. Aono
    "Structural Basis for Oxygen Sensing and Signal Transduction of the Heme-Based Sensor Protein Aer2 from Pseudomonas Aeruginosa"
    Chem. Commun., 48, 6523-6525 (2012).

  4. R. Makino, S. Yazawa, H. Hori, and Y. Shiro
    "Interactions of Soluble Guanylate Cyclase with a P-Site Inhibitor: Effects of Gaseous Heme Ligands, Azide, and Allosteric Activators on the Binding of 2'-Deoxy-3'-GMP"
    Biochemistry, 51, 9277-9289 (2012).

  5. S. Asamizu, S. Hirano, H. Onaka, H. Koshino, Y. Shiro, and S. Nagano
    "Coupling Reaction of Indolepyruvic Acid by StaD and Its Product: Implications of Biosynthesis of Indolocarbazole and Violacein"
    ChemBioChem, in press (2012).

  6. T. Fujishiro, O. Shoji, N. Kawakami, T. Watanabe, H. Sugimoto, Y. Shiro, and Y. Watanabe
    "Chiral Substrate Analogues Assisted Stereoselective Epoxidation Catalyzed by H2O2-Dependent Cytochrome P450SPa"
    Chem. Asian J., 7, 2286-2293 (2012).

  7. H. Arai, Y. Horikawa, K. Sadakane, T. Tokushima, Y. Harada, Y. Senba, H. Ohashi, Y. Takata, and S. Shin
    "Hydrogen Bonding of Water in 3-methylpyridine Studied by O 1s X-Ray Emission and Absorption Spectroscopy"
    Phys. Chem. Chem. Phys., 14, 1576-1580 (2012).

  8. Y. Horikawa, H. Arai, T. Tokushima, and S. Shin
    "Spectral Fingerprint in X-Ray Absorption for Hydrogen-Bonded Dimer Formation of Acetic Acids in Solution"
    Chem. Phys. Lett., 522, 33-37(2012).

  9. T. Kiss, A. Chainani, H. M. Yamamoto, T. Miyazaki, T. Akimoto, T. Shimojima, K. Ishizaka, S. Watanabe, C. T. Chen, A. Fukaya, R. Kato, and S. Shin
    "Quasiparticles and Fermi Liquid Behavior in an Organic Metal"
    Nature Commun., 3, 1089-1094 (2012).

  10. S. Nakajima, T. Suzuki, Y. Ishii, K. Ohishi, I. Watanabe, T. Goto, A. Oosawa, N. Yoneyama, N. Kobayashi, F. L. Pratt, and T. Sasaki
    "Microscopic Phase Separation in Triangular-Lattice Quantum Spin Magnet κ-(BEDT-TTF)2Cu2(CN)3 Probed by Muon Spin Relaxation"
    J. Phys. Soc. Jpn., 81, 063706/1-4 (2012).

  11. Risdiana, B. Adiperdana, L. Safriani, A. Bahtiar, Fitrilawati, R. E. Siregar, R. Hidayat, A. A. Nugroho, M. O. Tjia, and I. Watanabe
    "μSR Study of Charge Carrier Diffusion in Regioregular Poly(3-butylthiophene)"
    Pysics Procedia, 30, 97-100 (2012).

  12. D. Fujita, K. Suzuki, S. Sato, M. Yagi-Utsumi, Y. Yamaguchi, N. Mizuno, T. Kumasaka, M. Takata, M. Noda, S. Uchiyama, K. Kato, and M. Fujita
    "Protein Encapsulation within Synthetic Molecular Hosts"
    Naure Commun., 3, 1093/1-7 (2012).

  13. J. J. Lee, A. Yamaguchi, Md. A. Alam, Y. Yamamoto, T. Fukushima, K. Kato, M. Takata, N. Fujita, and T. Aida
    "Discotic Ionic Liquid Crystals of Triphenylene as Dispersants for Orienting Single-Walled Carbon Nanotubes"
    Angew. Chem. Int. Ed., 51, 8490-8494 (2012).

  14. R. Charvet, Y. Yamamoto, T. Sasaki, J. Kim, K. Kato, M. Takata, A. Saeki, S. Seki, and T. Aida
    "Segregated and Alternately Stacked Donor/Acceptor Nanodomains in Tubular Morphology Tailored with Zinc Porphyrin-C60 Amphiphilic Dyads: Clear Geometrical Effects on Photoconduction"
    J. Am. Chem. Soc., 134, 2524-2527 (2012).

  15. D. Miyajima, F. Araoka, H. Takezoe, J. Kim, K. Kato, M. Takata, and T. Aida
    "Ferroelectric Columnar Liquid Crystal Featuring Confined Polar Groups within Core-Shell Architecture"
    Science, 336, 209-213 (2012).

  16. Y. Ito, T. Mikawa, and B. O. Smith
    "In-Cell NMR of Intrinsically Disordered Proteins: Prokariotic Cells"
    Methods. Mol. Biol., 895, 19-31 (2012).

  17. K. Kawasaki, T. Kanaba, M. Yoneyama, N. Murata-Kamiya, C. Kojima, Y. Ito, H. Kamiya, and M. Mishima
    "Insights into Substrate Recognition by the E. coli orf135 Protein through its Solution Structure"
    Biochem. Biophys. Res. Commun., 420, 263-368 (2012).

  18. T. P. I. Saragi, Risdiana, L. Safriani, I. Kawasaki, J. Salbeck, and I. Watanabe
    "Muon-Spin-Relaxation Study of Organic Semiconductor Spiro-Linked Compound"
    Organic Electronics, 14, 62-66 (2012).

  19. T. Hino, S. Nagano, H. Sugimoto, T. Tosha, and Y. Shiro
    "Molecular Structures and Mechanism of Bacterial Nitric Oxide Reductase"
    Special Issue on Respiratory Oxidases in Biochim. Biophys. Acta - Bioenergetics, 1817, 680-687 (2012).

  20. Y. Shiro, H. Sugimoto, T. Tosha, S. Nagano, and T. Hino
    "Structural Basis for Nitrous Oxide Generation by Bacterial Nitric Oxide Reductases"
    the Proceedings of the Royal Society Meeting 'Nitrous oxide, the forgotten greenhouse gas', Philosophical Transactions B, The Royal Society, 367, 1195-1203 (2012).

  21. Y. Shiro
    "Structure and Function of Bacterial Nitric Oxide Reductases, Anaerobic Enzymes"
    Special Issue on European BioEnergetic Conference 2012 in Biochim. Biophys. Acta - Bioenergetics, 1817, 1907-1913 (2012).

  22. H. Sugimoto, and Y. Shiro
    "Diversity and Substrate Specificity in the Structures of Steroidogenic Cytochrome P450 Enzymes"
    Biol. Pharm. Bull. , 35, 818-823 (2012).