Paper

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Molecular Ensemble Development Research
  1. Y. Kawasugi, H. M. Yamamoto, M. Hosoda, N. Tajima, T. Fukunaga, K. Tsukagoshi, and R. Kato
    "Strain-inducedsuperconductor/insulator transition and field effect in a thin single crystal of molecular conductor"
    Appl. Phys. Lett., 92, 243508/1-3 (2008).

  2. T. Itou, A. Oyamada, S. Maegawa, M. Tamura, and R. Kato
    "Quantum spin liquid in the spin-1/2 triangular antiferromagnet EtMe3Sb[Pd(dmit)2]2"
    Phys. Rev. B, 77, 104413/1-104413/5 (2008).

  3. S. Fujiyama, A. Shitade, K. Kanoda, Y. Kosaka, H. M. Yamamoto, and R. Kato
    "Suppression of electronic susceptibility in metal-Mott-insulator alternating material (Me-3,5-DIP)[Ni(dmit)2]2 observed using 13C NMR"
    Phys. Rev. B, 77, 060403/1-060403/4 (2008).

  4. H. M. Yamamoto, Y. Kosaka, R. Maeda, J. Yamaura, A. Nakao, T. Nakamura, and R. Kato
    "Supramolecular Insulating Networks Sheathing Conducting Nanowires Based on Organic Radical Cations"
    ACS Nano, 2(1), 143-155 (2008).

  5. H. Okimi, Y. Sakaguchi, K. Asada, and M. Hara
    "Resonant Microwave Irradiation Effect on the Emission Process of an Organic Electroluminescent Material"
    Bull. Chem. Soc. Jpn., 81(4), 469-477 (2008).

  6. Y. Kitahama and Y. Sakaguchi
    "Viscosity Dependence of the Kinetic Parameters of the Radical Ion Pair in Homogeneous Solution Determined by Optically Detected X- and Ku-Band Electron Spin Resonance"
    J. Phys. Chem. A., 112(3), 347-352 (2008).

  7. Y. Kitahama and Y. Sakaguchi
    "Magnetic Isotope Effect on Kinetic Parameters and Quantum Beats of Radical Pairs in Micellar Solution Studied by Optically Detected ESR Using Pulsed Microwave"
    J. Phys. Chem. A., 112(2), 176-182 (2008).

  8. M. Yousufuddin, M. J. Gutmann, J. Baldamus, O. Tardif, Z. Hou, S. A. Mason, G. J. McIntyre, R. Bau
    "Neutron Diffraction Studies on a 4-Coordinate Hydrogen Atom in an Yttrium Cluster"
    J. Am. Chem. Soc. 130, 3888 (2008).

  9. T. Shima, Z. Hou
    "Activation and Dehydrogenative Silylation of the C-H Bonds of Phosphine-coordinated Ruthenium in Lu/Ru Heteromultimetallic Hydride Complexes"
    Chem. Lett. 37, 298-299 (2008).

  10. Y. Luo, Z. Hou
    "Prediction of Binary Lanthanide(III) Hydride Clusters LnnH3n (Ln = La, Gd, and Lu; n = 3 and 4)"
    J. Phys. Chem. C 112, 635 (2008).

  11. D. Cui, M. Nishiura, O. Tradif and Z. Hou
    "Rare-Earth-Metal Mixed Hydride/Aryoxyide Complexes Bearing Mono(cyclopentadienyl) Ligands. Synthesis, CO2 fixation, and Catalysis on Copolymerization of CO2 with Cyclohexene Oxide"
    Organometallics. 27, 2428-2435 (2008).

  12. K. Kawai, A. Saito, T. Sudo, and H. Osada
    "Specific regulation of cytokine dependent p38 MAP kinase activation by p62/SQSTM1."
    J. Biochem., 143, 765-772 (2008)

  13. A. Saito, K. Kawai, H. Takayama, T. Sudo, and H. Osada
    "Improvement of Photoaffinity SPR Imaging Platform and Determination of the Binding Site of p62/SQSTM1 to p38 MAP Kinase."
    Chem Asian J., 3, 1607-1612 (2008)

  14. H. Kamiyama, T. Usui, M. Uramoto, H. Takagi, M. Shoji, Y. Hayashi, H. Kakeya and H. Osada
    "Fungal Metabolite, Epoxyquinol B, Crosslinks Proteins by Epoxy-thiol Conjugation"
    J. Antibiot, 61, 94-97 (2008)

  15. H. Katayama, A. Yamamoto, Yoshimori T, Mizushima N, and A. Miyawaki
    "GFP-like Proteins Stably Accumulation in Lysosomes"
    Cell Struct. Funct., 33, 1-12 (2008).

  16. A. Sakaue-Sawano, H. Kurokawa, T. Morimura, A. Hanyu, H. Hama, H. Osawa, S. Kashiwagi, K. Fukami, T. Miyata, H. Miyoshi, T. Imamura, M. Ogawa, H. Masai, and A. Miyawaki
    "Visualizing Spatiotemporal Dynamics of Multicellular Cell Cycle Progression"
    Cell, 132, 487-498 (2008).

  17. A. Sakaue-Sawano, K. Ohtawa, H. Hama, M. Kawano, M. Ogawa, A. Miyawaki
    "Tracing the Silhouette of Individual Cells in S/G2/M Phases with Fluorescence"
    Chemistry & Biology, 15, 1243-1248 (2008)

  18. H. Tsutsui, S. Karasawa, Y. Okamura, A. Miyawaki
    "Improving membrane voltage measurements using FRET with new fluorescent proteins"
    Nature Methods, 5, 683-685 (2008)

  19. H. Mizuno, Mal T. Kumar, M. Walchli, A. Kikuchi, T. Fukano, R. Ando , J. Jeyakanthan, J. Taka, Y. Shiro, M. Ikura, A. Miyawaki
    "Light-dependent regulation of structural flexibility in a photochromic fluorescent protein"
    Proc. Natl. Acad. Sci. USA., 105, 9927-9932 (2008)

  20. A. Fukaya and R. Kato
    "Electric Properties of Mixed Compound [(CH3)4N][NixPd1-x(dmit)2]2"
    J. Phys. Soc. Jpn., 77(9), 094710/1-5 (2008).

  21. K. Kubo, A. Nakao, Y. Ishii, T. Yamamoto, M. Tamura, R. Kato, K. Yakushi, and G. Matsubayashi
    "Electrical Properties and Electronic States of Molecular Conductors Based on Unsymmetrical Organometallic-Dithiolene Gold(III) Complexes"
    Inorg. Chem., 47(12), 5495-5502 (2008).

  22. H. M. Yamamoto, Y. Kawasugi, H. Ito, T. Fukunaga, T. Suzuki, K. Tsukagoshi, R. Kato
    "Conduction Properties of Micro-Crystals of 2,5-dimethyl-N,N'- dicyanoquinonediimine Metal (Metal = Ag, Cu) Complexes on SiO2/Si Substrates"
    Solid State Sci., 10(12), 1757-1761 (2008).

分子アンサンブル測定・解析研究
  1. E. Kinoshita, E. Kinoshita-Kikuta, M. Matsubara, S. Yamada, H. Nakamura, Y. Shiro, Y. Aoki, K. Okita, and T. Koike
    "Separation of phosphoprotein isotypes having the same number of phosphate groups using phosphate-affinity SDS-PAGE"
    Proteomics, 8(15), 2994-3003 (2008)

  2. T. Kurahashi, A. Kikuchi, T. Tosha, Y. Shiro, T. Kitagawa, and H. Fujii
    "Transient Intermediates from Mn(salen) with Sterically Hindered Mesityl Groups: Interconversion between MnIV-Phenolate and MnIII-Phenoxyl Radicals as an Origin for Unique Reactivity"
    Inorg. Chem. 47, 1674-1686 (2008).

  3. H. Sugimoto, R. Shinkyo, K. Hayashi, S. Yoneda, M. Yamada, M. Kamakura, S. Ikushiro, Y. Shiro, and T. Sakaki
    "Crystal Structure of CYP105A1 (P450SU-1) in Complex with 1α, 25-dihydroxyvitamin D3"
    Biochemistry 47, 4017-4027 (2008).

  4. A. Zoellner, N. Kagawa, M. R. Waterman, Y. Nonaka, K. Takio, Y. Shiro, F. Hannemann, and R. Bernhardt
    "Purification and Functional Characterization of Human 11β Hydroxylase Expressed in E. coli"
    FEBS J. 275, 799-810 (2008).

  5. N. Ohshima, S. Yamashita, N. Takahashi, C. Kuroishi, Y. Shiro, and K. Takio
    "Escherichia coli Cytosolic Glycerophosphodiester Phosphodiesterase (UgpQ) Requires Mg2+, Co2+, or Mn2+ for Its Enzyme Activity"
    J. Bacteriol. 190, 1219-1223 (2008).

  6. T. Koshiyama, N. Yokoi, T. Ueno, S. Kanamaru, S. Nagano, Y. Shiro, F. Arisaka, and Y. Watanabe
    "Molecular Design of Heteroprotein Assemblies Providing a Bionanocup as a Chemical Reactor"
    Small 4, 50-54 (2008).

  7. S. Hirano, S. Asamizu, H. Onaka, Y. Shiro, and S. Nagano
    "Crystal Structure of VioE, a Key Player in the Construction of the Molecular Skelton of Violacein"
    J. Biol. Chem. 283, 6459-6466 (2008) .

  8. M. Honda, T. Fujisawa, T. Shibata and T. Mikawa
    "RecR forms a ring-like tetramer that encircles dsDNA by forming a complex with RecF "
    Nucleic. Acids. Res. 36, 5013-5020 (2008) .

  9. T. Terada, D. Satoh, T. Mikawa, Y. Ito and K. Shimizu
    "Understanding the roles of amino acid residues in tertiary structure formation of chignolin by using molecular dynamics simulation"
    Proteins, 73, 621-631 (2008) .

  10. H. Mizuno, T. Mal, M. Waelchli, A. Kikuchi, T. Fukano, R. Ando, J. Jeyaraman, J. Taka, Y. Shiro, M. Ikura and A. Miyawaki
    "Light-dependent regulation of structural flexibility in a photochromic fluorescent protein"
    Proc. Natl. Acad. Sci. USA, 105, 9927-9932 (2008) .

  11. H. Hosoi, S. Yamaguchi, H. Mizuno, A. Miyawaki and T. Tahara
    "Hidden Electronic State of Enhanced Green Fluorescence Protein"
    J. Phys. Chem. B., 112, 2761-2763 (2008).

  12. S. Yamaguchi and T. Tahara
    "Novel interface-selective even-order nonlinear spectroscopy"
    Laser & Photon Rev., 2, 74-82 (2008).

  13. P. Sen, S. Yamaguchi and T. Tahara
    "New Insight into the Surface Denaturation of Proteins: Electronic Sum Frequency Generation Study of Cytochrome c at Water Interfaces"
    J. Phys. Chem. B, 112, 13473-13475 (2008).

  14. T. Tokushima, Y. Harada, O. Takahashi, Y. Senba, H. Ohashi, L.G.M. Pettersson, A. Nilsson, and S. Shin
    "High Resolution X-ray Emission Spectroscopy of Liquid Water: the Observation of Two Structural Motifs"
    Chem. Phys. Lett. 460, 387-400(2008)

  15. K. Kanai, T. Nishi, T. Iwahashi, Y. Ouchi, K. Seki, Y. Harada and S. Shin
    "Anomalous electronic structure of ionic liquids determined by soft x-ray emission spectroscopy: Contributions from the cations and anions to the occupied electronic structure"
    J. Chem. Phys, 129, 224507/1-224507/5 (2008).

  16. K. Kanai, T. Nishi, T. Iwahashi, Y. Ouchi, K. Seki, Y. Harada and S. Shin
    "Anomalous electronic structure of ionic liquids determined by soft x-ray emission spectroscopy: Contributions from the cations and anions to the occupied electronic structure"
    固体物理Solid state physics, 43, 11,(513) 711-720 (2008).

  17. T. Tokushima, Y. Harada and S. Shin
    "Element specific spectroscopy to observe valence electronic states of liquids and solutions: soft x-ray emission studies at BL17SU soft x-ray beamline in SPring-8"
    日本物理学会誌Butsuri, 63, 11,852-857 (2008).

  18. M. Matsunami, A. Chainani, M. Taguchi, R. Eguchi, Y. Ishida, Y. Takata, H. Okamura, T. Nanba, M. Yabashi, K. Tamasaku, Y. Nishino, T. Ishikawa, Y. Senba, H. Ohashi, N. Tsujii, A. Ochiai, and S. Shin
    "Combining photoemission and optical spectroscopies for reliable valence determination in YbS and Yb metal"
    Phys. Rev. B, 78, 195118/1-195118/5 (2008).

  19. Y. Ishida, T. Shimojima, K. Ishizaka, T. Kiss, M. Okawa, T. Togashi, S. Watanabe, X. Wang, C. Chen, Y. Kamihara, M. Hirano, H. Hosono and . Shin
    "Unusual Pseudogap Features Observed in Iron Oxypnictide Superconductors"
    J. Phys. Soc. Jpn, 77, Suppl C, 61-64 (2008).

  20. L. G. M. Pettersson, T. Tokushima, Y. Harada, O. Takahashi, S. Shin and A. Nilsson
    "Comment on “Isotope and Temperature Effects in Liquid Water Probed by X-Ray Absorption and Resonant X-Ray Emission Spectroscopy"
    Phys. Rev. Lett, 100, 249801 (2008).

  21. Y. Takata, Y. Kayanuma, S. Oshima, S. Tanaka, M. Yabashi, K. Tamasaku, Y. Nishino, M. Matsunami, R. Eguchi, A. Chainani, M. Oura, T. Takeuchi, Y. Senba, H. Ohashi, S. Shin and T. Ishikawa
    "Recoil Effect of Photoelectrons in the Fermi Edge of Simple Metals"
    Phys. Rev. Lett, 101, 137601/1-137601/4 (2008).

  22. R. Eguchi, M. Taguchi, M. Matsunami, K. Horiba, K. Yamamoto, Y. Ishida, A. Chainani, Y. Takata, M. Yabashi, D. Miwa, Y. Nishino, K. Tamasaku, T. Ishikawa, Y. Senba, H. Ohashi, Y. Muraoka, Z. Hiroi, and S. Shin
    "Photoemission evidence for a Mott-Hubbard metal-insulator transition in VO2"
    Phys. Rev. B, 78, 075115/1-075115/6 (2008).

  23. T. Tokushima, K. Sodeyama, Y. Harada, Y. Takata, M. Nagasono, Y. Kitajima, Y. Tamenori, H. Ohashi, S. Tsuneyuki, A. Hiraya and S. Shin
    "σ-bonding contribution of a strong π-acceptor molecule: Surface chemical bond of SO2 on Ni(100)"
    Phys. Rev. B, 78, 085405/1-085405/5 (2008).

  24. M. Mulazzi, A. Chainani, Y. Takata, Y. Tanaka, Y. Nishino, K. Tamasaku, T. Ishikawa, T. Takeuchi, Y. Ishida, Y. Senba, H. Ohashi and S. Shin
    "Temperature dependence of the exchange stiffness in FePd(001) thin films: Deviation from the empirical law A(T)∝MS2 at intermediate temperatures"
    Phys. Rev. B, 77, 224425/1-224425/10 (2008).

  25. Y. Takagi, K. Nakatsuji, Y. Yoshimoto, T. Iimori, K. Yaji, K. Tomatsu, Y. Harada, T. Takeuchi, T. Tokushima, Y. Takata, S. Shin, T. Ishikawa and . Komori
    "Soft X-ray emission spectroscopy of Co nanoislands on a nitrogen-adsorbed Cu(0 0 1) surface "
    Surf. Sci, 602, L65-L68 (2008).

  26. M. Taguchi, M. Matsunami, Y. Ishida, R. Eguchi, A. Chainani, Y. Takata, M. Yabashi, K. Tamasaku, Y. Nishino, T. Ishikawa, Y. Senba, H. Ohashi and S. Shin
    "Revisiting the Valence-Band and Core-Level Photoemission Spectra of NiO"
    Phys. Rev. Lett, 100, 206401/1-206401/4 (2008).

  27. K. Ishizaka, R. Eguchi, S. Tsuda, A. Chainani, T. Yokoya, T. Kiss, T. Shimojima, T. Togashi, S. Watanabe, C.T. Chen, Y. Takano, M. Nagao, I. Sakaguchi, T. Takenouchi, H. Kawarada and S. Shin
    "Temperature-Dependent Localized Excitations of Doped Carriers in Superconducting Diamond"
    Phys. Rev. Lett, 100, 166402/1-166402/4 (2008).

  28. M. Matsunami, K. Horiba, M. Taguchi, K. Yamamoto, A. Chainani, Y. Takata, Y. Senba, H. Ohashi, M. Yabashi, K. Tamasaku, Y. Nishino, D. Miwa, T. Ishikawa, E. Ikenaga, K. Kobayashi, H. Sugawara, H. Sato, H. Harima and S. Shin1
    "Electronic structure of semiconducting CeFe4P12: Strong hybridization and relevance of single-impurity Anderson model"
    Phys. Rev. B, 77, 165126/1-165126/5 (2008).

  29. Y. Tanaka, T. Takeuchi, S. W. Lovesey, K. S. Knight, A. Chainani, Y. Takata, M. Oura, Y. Senba, H. Ohashi and S. Shin
    "Right Handed or Left Handed? Forbidden X-Ray Diffraction Reveals Chirality"
    Phys. Rev. Lett, 100, 145502/1-145502/4 (2008).

  30. T. Kiss, T. Shimojima, K. Ishizaka, A. Chainani, T. Togashi, T. Kanai, X.Y. Wang, C.T. Chen, S. Watanabe and S. Shin
    "A versatile system for ultrahigh resolution, low temperature, and polarization dependent Laser-angle-resolved photoemission spectroscopy"
    Rev. Sci. Instrum, 79, 023106/1-023106/7 (2008).

  31. K. Ishizaka, T. Kiss, S. Izumi, M. Okawa, T. Shimojima, A. Chainani, T. Togashi, S. Watanabe, C.T. Chen, X. Y. Wang, T. Mochiku, T. Nakane, K. Hirata and S. Shin
    "Doping-dependence of nodal quasiparticle properties in high- Tc cuprates studied by laser-excited angle-resolved photoemission spectroscopy"
    Phys. Rev. B, 77, 064522/1-064522/5 (2008).

  32. M. Sano, S. Takahashi, T. Mochizuki, A. Watanabe, M. Oura and H. Kitamura
    "Quantitative estimation of thermal contact conductance of a real front-end component at SPring-8 front-ends"
    J. Synch. Rad, 15, 1-7 (2008).

  33. Y. Ishida, R. Eguchi, M. Matsunami, K. Horiba, M. Taguchi, A. Chainani, Y. Senba, H. Ohashi, H. Ohta and S. Shin
    "Coherent and Incoherent Excitations of Electron-Doped SrTiO3"
    Phys. Rev. Lett, 100, 056401/1-056401/4 (2008).

  34. N. Tsujii, H. Yamaoka, M. Matsunami, R. Eguchi, Y. Ishida, Y. Senba, H. Ohashi, S. Shin, T. Furubayashi, H. Abe and H. Kitazawa
    "Observation of Energy Gap in FeGa3"
    J. Phys. Soc. Jpn, 77, 024705/1-024705/5 (2008).

  35. H. Yamaoka, H. Oohashi, I. Jarrige, T. Terashima, Y. Zou, H. Mizota, S. Sakakura, T. Tochio, Y. Ito, E. Ya. Sherman and A. Kotani
    "X-ray spectroscopic study of the electronic structure of Y1-xPrxBa2Cu3O7"
    Phys. Rev. B, 77, 045135/1-045135/7 (2008).

  36. H. Wadati, Y. Hotta, A. Fujimori, T. Susaki, H. Y. Hwang, Y. Takata, K. Horiba, M. Matsunami, S. Shin, M. Yabashi, K.i Tamasaku, Y. Nishino and T. Ishikawa
    "Hard x-ray photoemission study of LaAlO3/LaVO3 multilayers"
    Phys. Rev. B, 77, 045122/1-045122/6 (2008).

  37. T. Baba, T. Yokoya, S. Tsuda, T. Kiss, T. Shimojima, K. Ishizaka, H. Takeya, K. Hirata, T. Watanabe, M. Nohara, H. Takagi, N. Nakai, K. Machida, T. Togashi, S. Watanabe, X.Y. Wang, C. T. Chen and S. Shin
    "Bulk Electronic Structure of the Antiferromagnetic Superconducting Phase in ErNi2B2C"
    Phys. Rev. Lett, 100, 017003/1-017003/4 (2008).

  38. S. Akiyama, A. Nohara, K. Ito and Y. Maeda
    "Assembly and Disassembly Dynamics of the Cyanobacterial Periodosome"
    Molecular Cell, 29, 703-716 (2008).

  39. M. Fujita, T. Sawayanagi, H. Abe, T. Tanaka, T. Iwata, K. Ito, T. Fujisawa, and M. Maeda
    "Stereocomplex Formation through Reorgnization of Poly(L-lactic acid) and Poly(D-lactic acid) Crystals"
    Macromolecules, 41(8), 2852-2858 (2008).

  40. K. Kato, Y. Moritomo, M. Takata, H. Tanaka, and N. Hamada
    "Visualization of charge ordering in a half-doped manganite by an electrostatic potential analysis"
    Phys. Rev. B, 77(8), 081101-1-081101-4 (2008).

  41. H. Kobayashi, M. Yamauchi, H. Kitagawa, Y. Kubota, K. Kato, and M. Takata
    "On the Nature of Strong Hydrogen Atom Trapping Inside Pd Nanoparticles"
    J. Am. Chem. Soc., 130(6), 1828 -1829 (2008).

  42. H. Kobayashi, M. Yamauchi, H. Kitagawa, Y. Kubota, K. Kato, and M. Takata
    "Hydrogen Absorption in the Core/Shell Interface of Pd/Pt Nanoparticles"
    J. Am. Chem. Soc., 130(6), 1818 -1819 (2008).

  43. E. Fujiwara, K. Hosoya, A. Kobayashi, H. Tanaka, M. Tokumoto, Y. Okano, H. Fujiwara, H. Kobayashi, Y. Fujishiro, E. Nishibori, M. Takata, and M. Sakata
    "Conducting Dimerized Cobalt Complexes with Tetrathiafulvalene Dithiolate Ligands"
    Inorg. Chem., 47(3), 863 -874 (2008).

  44. M. Takata
    "The MEM/Rietveld method with nano-applications-accurate charge-density studies of nano-structrured materials by synchrotron-radiation powder diffraction"
    Acta Cryst., A64, 232-245 (2008).

  45. M. Yamauchi, R. Ikeda, H. Kitagawa, and M. Takata
    "Nanosize Effects on Hydrogen Storage in Palladium"
    J. Phys. Chem. C, 112(9), 3294-3299 (2008).

  46. T. Terada, D. Satoh, T. Mikawa, Y. Ito & K. Shimizu
    "Understanding the roles of amino acid residues in tertiary structure formation of chignolin by using molecular dynamics simulation "
    Proteins 73, 621-631 (2008).

  47. A. Kikuchi, E. Fukumura, S. Karasawa, H. Mizuno, A. Miyawaki and Y. Shiro
    "Structural Characterization of a Thiazoline-Containing Chromophore in an Orange Fluorescent Protein, Monomeric Kusabira Orange"
    Biochemistry, 47, 11573-11580 (2008).

  48. H. Hosoi, S. Yamaguchi, H. Mizuno, A. Miyawaki, and T. Tahara
    "Hidden Electronic Excited State of Enhanced Green Fluorescent Protein"
    J. Chem. Phys. B, 112, 2761-2763 (2008).

  49. K. Sekiguchi, S. Yamaguchi, and T. Tahara
    "Femtosecond Time-Resolved Electronic Sum-Frequency Generation (TR-ESFG) Spectroscopy: A New Method to Investigate Ultrafast Dynamics at Liquid Interfaces"
    J. Chem. Phys., 128(11), 114715/1-8 (2008).