2001年以降の論文リスト

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    2024

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  1. Mori K, Suzuki T, Waki U, Hayashi S, Kadono S, Kawahara R, Takeuchi M, Mizuta H, Dohmae N, Katayama R, Simizu S."Identification of C-mannosylation in a receptor tyrosine kinase AXL.”Glycobiology. 2024 34(11):cwae096.[pubmed]
  2. Kurogi H, Takasugi N, Kubota S, Kumar A, Suzuki T, Dohmae N, Sawada D, Zhang KYJ, Uehara T."Discovery of a Compound That Inhibits IRE1α S-Nitrosylation and Preserves the Endoplasmic Reticulum Stress Response under Nitrosative Stress.”ACS Chem Biol. 2024 19(12):2429-2437.[pubmed]
  3. Yoshida Y, Takahashi T, Ishii N, Matsuo I, Takahashi S, Inoue H, Endo A, Tsuchiya H, Okada M, Ando C, Suzuki T, Dohmae N, Saeki Y, Tanaka K, Suzuki T."Sugar-mediated non-canonical ubiquitination impairs Nrf1/NFE2L1 activation.”Mol Cell. 2024 84(16):3115-3127.e11.[pubmed]
  4. Nagao R, Yamamoto H, Ogawa H, Ito H, Yamamoto Y, Suzuki T, Kato K, Nakajima Y, Dohmae N, Shen JR."Presence of low-energy chlorophylls d in photosystem I trimer and monomer cores isolated from Acaryochloris sp. NBRC 102871”Photosynth Res. 2024 161(3):203-212.[pubmed]
  5. Hayashi Y, Suzuki T, Horioka N, Dohmae N, Tanikawa T."Phospholipid Scramblase 1 Localizes Proximal to Sphingomyelin Synthase Isoforms but Is Not Involved in Sphingomyelin Synthesis.”Biol Pharm Bull. 2024 47(6):1136-1143.[pubmed]
  6. Suzuki T, Ogawa H, Dohmae N, Shen JR, Ehira S, Nagao R."Strong interaction of CpcL with photosystem I cores induced in heterocysts of Anabaena sp. PCC 7120.”MicroPubl Biol. 2024 10.17912/micropub.biology.001183.[pubmed]
  7. Ota A, Kitamura H, Sugimoto K, Ogawa M, Dohmae N, Okuno H, Takahashi K, Ikeda K, Tomita T, Matsuoka N, Matsuishi K, Inokuma T, Nagano T, Takeo M, Tsuji T."Comparative studies of hair shaft components between healthy and diseased donors.”PLoS One. 2024 19(5):e0301092.[pubmed]
  8. Nishiyama K, Aihara Y, Suzuki T, Takahashi K, Kinoshita T, Dohmae N, Sato A, Hagihara S."Discovery of a Plant 14-3-3 Inhibitor Possessing Isoform Selectivity and In Planta Activity.”Angew Chem Int Ed Engl. 2024 e202400218. [pubmed]
  9. Yamagata A, Ito K, Suzuki T, Dohmae N, Terada T, Shirouzu M."Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A”Nat Commun. 2024 15(1):3027. [pubmed]
  10. Kaizuka T, Suzuki T, Kishi N, Tamada K, Kilimann MW, Ueyama T, Watanabe M, Shimogori T, Okano H, Dohmae N, Takumi T."Remodeling of the postsynaptic proteome in male mice and marmosets during synapse development”Nat Commun. 2024 15(1):2496. [pubmed]
  11. Kato K, Hamaguchi T, Kumazawa M, Nakajima Y, Ifuku K, Hirooka S, Hirose Y, Miyagishima SY, Suzuki T, Kawakami K, Dohmae N, Yonekura K, Shen JR, Nagao R."The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs." Proc Natl Acad Sci USA. 2024 121(11):e2319658121.5. [pubmed]
  12. Chiba Y, Ooka H, Wintzer ME, Tsunematsu N, Nogawa T, Suzuki T, Dohmae N, Nakamura R."Rationalizing the Influence of the Binding Affinity on the Activity of Phosphoserine Phosphatases." Angew Chem Int Ed Engl. 2024 e202318635. [pubmed]
  13. Taniguchi R, Moriya Y, Dohmae N, Suzuki T, Nakahara K, Kubota S, Takasugi N, Uehara T."Attenuation of protein arginine dimethylation via S-nitrosylation of protein arginine methyltransferase 1." J Pharmacol Sci. 2024 154(3):209-217. [pubmed]
  14. Morimoto A, Takasugi N, Pan Y, Kubota S, Dohmae N, Abiko Y, Uchida K, Kumagai Y, Uehara T."Methyl vinyl ketone and its analogs covalently modify PI3K and alter physiological functions by inhibiting PI3K signaling." J Biol Chem. 2024 300(3):105679. [pubmed]

    15. 2023

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  15. Furutani Y, Hirano Y, Toguchi M, Higuchi S, Qin XY, Yanaka K, Sato-Shiozaki Y, Takahashi N, Sakai M, Kongpracha P, Suzuki T, Dohmae N, Kukimoto-Niino M, Shirouzu M, Nagamori S, Suzuki H, Kobayashi K, Masaki T, Koyama H, Sekiba K, Otsuka M, Koike K, Kohara M, Kojima S, Kakeya H, Matsuura T."A small molecule iCDM-34 identified by in silico screening suppresses HBV DNA through activation of aryl hydrocarbon receptor.”Cell Death Discov. 2023 9(1):467. [pubmed]
  16. Pan Y, Suzuki T, Sakai K, Hirano Y, Ikeda H, Hattori A, Dohmae N, Nishio K, Kakeya H."Bisabosqual A: A novel asparagine synthetase inhibitor suppressing the proliferation and migration of human non-small cell lung cancer A549 cells.”Eur J Pharmacol. 2023 960:176156. [pubmed]
  17. Kawatani M, Aono H, Hiranuma S, Shimizu T, Muroi M, Nogawa T, Ohishi T, Ohba SI, Kawada M, Yamazaki K, Dan S, Dohmae N, Osada H."Identification of a dihydroorotate dehydrogenase inhibitor that inhibits cancer cell growth by proteomic profiling.”Oncol Res. 2023 31(6):833-844. [pubmed]
  18. Shimazu T, Yoshimoto R, Kotoshiba K, Suzuki T, Matoba S, Hirose M, Akakabe M, Sohtome Y, Sodeoka M, Ogura A, Dohmae N, Shinkai Y."Histidine N1-position-specific methyltransferase CARNMT1 targets C3H zinc finger proteins and modulates RNA metabolism.”Genes Dev. 2023 37(15-16):724-742.[pubmed]
  19. Jiang X, Ogawa T, Yonezawa K, Shimizu N, Ichinose S, Uchihashi T, Nagaike W, Moriya T, Adachi N, Kawasaki M, Dohmae N, Senda T, Hirokawa N."The two-step cargo recognition mechanism of heterotrimeric kinesin.”EMBO Rep. 2023 24(11):e56864.[pubmed]
  20. Kawahara R, Usami T, Arakawa S, Kamo H, Suzuki T, Komatsu R, Hara H, Niwa Y, Shimizu E, Dohmae N, Shimizu S, Simizu S."Biogenesis of fibrils requires C-mannosylation of PMEL.”FEBS J. 2023 290(22):5373-5394.[pubmed]
  21. Harada Y, Mizote Y, Suzuki T, Hirayama A, Ikeda S, Nishida M, Hiratsuka T, Ueda A, Imagawa Y, Maeda K, Ohkawa Y, Murai J, Freeze HH, Miyoshi E, Higashiyama S, Udono H, Dohmae N, Tahara H, Taniguchi N."Metabolic clogging of mannose triggers dNTP loss and genomic instability in human cancer cells”Elife. 2023 12:e83870. [pubmed]
  22. Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T."Epigenetic mechanisms to propagate histone acetylation by p300/CBP”Nat Commun. 2023 14(1):4103. [pubmed]
  23. Shimizu S, Ogawa H, Tsuboshita N, Suzuki T, Kato K, Nakajima Y, Dohmae N, Shen JR, Nagao R."Tight association of CpcL with photosystem I in Anabaena sp. PCC 7120 grown under iron-deficient conditions”Biochim Biophys Acta Bioenerg. 2023 1864(4):148993. [pubmed]
  24. Qin XY, Furutani Y, Yonezawa K, Shimizu N, Kato-Murayama M, Shirouzu M, Xu Y, Yamano Y, Wada A, Gailhouste L, Shrestha R, Takahashi M, Keillor JW, Su T, Yu W, Fujii S, Kagechika H, Dohmae N, Shirakami Y, Shimizu M, Masaki T, Matsuura T, Suzuki H, Kojima S."Targeting transglutaminase 2 mediated exostosin glycosyltransferase 1 signaling in liver cancer stem cells with acyclic retinoid”Cell Death Dis. 2023 14(6):358.[pubmed]
  25. Kaga H, Matsumura H, Saito A, Saito M, Abe F, Suzuki T, Dohmae N, Odaka M, Komatsuda A, Wakui H, Takahashi N."Comparative proteomic analysis of glomerular proteins in IgA nephropathy and IgA vasculitis with nephritis.”Clin Proteomics. 2023 20(1):21.[pubmed]
  26. Fukuda K, Shimi T, Shimura C, Ono T, Suzuki T, Onoue K, Okayama S, Miura H, Hiratani I, Ikeda K, Okada Y, Dohmae N, Yonemura S, Inoue A, Kimura H, Shinkai Y."Epigenetic plasticity safeguards heterochromatin configuration in mammals.”Nucleic Acids Res. 2023 51(12):6190-6207.[pubmed]
  27. Noritsugu K, Suzuki T, Dodo K, Ohgane K, Ichikawa Y, Koike K, Morita S, Umehara T, Ogawa K, Sodeoka M, Dohmae N, Yoshida M, Ito A."Lysine long-chain fatty acylation regulates the TEAD transcription factor.”Cell Rep. 2023 42(4):112388.[pubmed]
  28. Nakagawa R, Hirano H, Omura SN, Nety S, Kannan S, Altae-Tran H, Yao X, Sakaguchi Y, Ohira T, Wu WY, Nakayama H, Shuto Y, Tanaka T, Sano FK, Kusakizako T, Kise Y, Itoh Y, Dohmae N, van der Oost J, Suzuki T, Zhang F, Nureki O."Cryo-EM structure of the transposon-associated TnpB enzyme.”Nature. 2023 616(7956):390-397.[pubmed]
  29. Kuchitsu Y, Mukai K, Uematsu R, Takaada Y, Shinojima A, Shindo R, Shoji T, Hamano S, Ogawa E, Sato R, Miyake K, Kato A, Kawaguchi Y, Nishitani-Isa M, Izawa K, Nishikomori R, Yasumi T, Suzuki T, Dohmae N, Uemura T, Barber GN, Arai H, Waguri S, Taguchi T."STING signalling is terminated through ESCRT-dependent microautophagy of vesicles originating from recycling endosomes”Nat Cell Biol. 2023 25(3):453-466. [pubmed]
  30. Nagao R, Kato K, Hamaguchi T, Ueno Y, Tsuboshita N, Shimizu S, Furutani M, Ehira S, Nakajima Y, Kawakami K, Suzuki T, Dohmae N, Akimoto S, Yonekura K, Shen JR."Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120”Nat Commun. 2023 14(1):920. [pubmed]
  31. Yoshimoto S, Suzuki T, Otani N, Takahashi D, Toshima K, Dohmae N, Simizu S."Destabilization of vitelline membrane outer layer protein 1 homolog (VMO1) by C-mannosylation."FEBS Open Bio. 2023 13(3):490-499.[pubmed]
  32. Matsumoto K, Ni S, Arai H, Toyama T, Saito Y, Suzuki T, Dohmae N, Mukai K, Taguchi T."A non-nucleotide agonist that binds covalently to cysteine residues of STING."Cell Struct Funct. 2023 48(1):59-70.[pubmed]
  33. Mizuta H, Takakusaki A, Suzuki T, Otake K, Dohmae N, Simizu S."C-mannosylation regulates stabilization of RAMP1 protein and RMAP1-mediated cell migration."FEBS J. 2023 290(1):196-208. [pubmed]
  34. Nakayama H, Nobe Y, Koike M, Taoka M."Liquid Chromatography-Mass Spectrometry-Based Qualitative Profiling of mRNA Therapeutic Reagents Using Stable Isotope-Labeled Standards Followed by the Automatic Quantitation Software Ariadne."Anal Chem. 2023 95(2):1366-1375. [pubmed]

    35. 2022

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  35. Miyazaki R, Ai M, Tanaka N, Suzuki T, Dohmae N, Tsukazaki T, Akiyama Y, Mori H."Inner membrane YfgM-PpiD heterodimer acts as a functional unit that associates with the SecY/E/G translocon and promotes protein translocation"J Biol Chem. 2022 298(11):102572. [pubmed]
  36. Kurimoto M, Chang TC, Nishiyama Y, Suzuki T, Dohmae N, Tanaka K, Yokoshima S."Anticancer Approach Inspired by the Hepatotoxic Mechanism of Pyrrolizidine Alkaloids with Glycosylated Artificial Metalloenzymes"Angew Chem Int Ed Engl. 2022 e202205541. [pubmed]
  37. Shimada Y, Suzuki T, Matsubara T, Kitajima-Ihara T, Nagao R, Dohmae N, Noguchi T."Post-translational amino acid conversion in photosystem II as a possible origin of photosynthetic oxygen evolution."Nat Commun. 2022 13(1):4211. [pubmed]
  38. Kaga H, Matsumura H, Suzuki T, Dohmae N, Odaka M, Komatsuda A, Takahashi N, Wakui H."Comparative proteomic analysis of glomerular proteins in primary and bucillamine-induced membranous nephropathy."Clin Proteomics. 2022 19(1):26. [pubmed]
  39. Matsuura-Suzuki E, Shimazu T, Takahashi M, Kotoshiba K, Suzuki T, Kashiwagi K, Sohtome Y, Akakabe M, Sodeoka M, Dohmae N, Ito T, Shinkai Y, Iwasaki S."METTL18-mediated histidine methylation of RPL3 modulates translation elongation for proteostasis maintenance."Elife. 2022 11:e72780. [pubmed]
  40. Yamaji-Hasegawa A, Murate M, Inaba T, Dohmae N, Sato M, Fujimori F, Sako Y, Greimel P, Kobayashi T."A novel sterol-binding protein reveals heterogeneous cholesterol distribution in neurite outgrowth and in late endosomes/lysosomes."Cell Mol Life Sci. 2022 79(6):324.[pubmed]
  41. Kondo K, Harada Y, Nakano M, Suzuki T, Fukushige T, Hanzawa K, Yagi H, Takagi K, Mizuno K, Miyamoto Y, Taniguchi N, Kato K, Kanekura T, Dohmae N, Machida K, Maruyama I, Inoue H."Identification of distinct N-glycosylation patterns on extracellular vesicles from small-cell and non-small-cell lung cancer cells."J Biol Chem. 2022 298(6):101950.[pubmed]
  42. Kato K, Hamaguchi T, Nagao R, Kawakami K, Ueno Y, Suzuki T, Uchida H, Murakami A, Nakajima Y, Yokono M, Akimoto S, Dohmae N, Yonekura K, Shen JR."Structural basis for the absence of low-energy chlorophylls in a photosystem I trimer from Gloeobacter violaceus."Elife. 2022 11:e73990.[pubmed]
  43. Nagao R, Kato K, Kumazawa M, Ifuku K, Yokono M, Suzuki T, Dohmae N, Akita F, Akimoto S, Miyazaki N, Shen JR."Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex."Nat Commun. 2022 13(1):1764.[pubmed]
  44. Kato K, Nagao R, Ueno Y, Yokono M, Suzuki T, Jiang TY, Dohmae N, Akita F, Akimoto S, Miyazaki N, Shen JR."Structure of a tetrameric photosystem I from a glaucophyte alga Cyanophora paradoxa."Nat Commun. 2022 13(1):1679.[pubmed]
  45. Nguyen-Tien D, Suzuki T, Kobayashi T, Toyama-Sorimachi N, Dohmae N."Identification of the interacting partners of a lysosomal membrane protein in living cells by BioID technique."STAR Protoc. 2022 3(2):101263.[pubmed]
  46. Shionoya K, Suzuki T, Takada M, Sato K, Onishi S, Dohmae N, Nishino K, Wada T, Linhardt RJ, Toida T, Higashi K."Comprehensive analysis of chondroitin sulfate and aggrecan in the head cartilage of bony fishes: Identification of proteoglycans in the head cartilage of sturgeon."Int J Biol Macromol. 2022 208:333-342.[pubmed]
  47. Fang Q, Kimura Y, Shimazu T, Suzuki T, Yamada A, Dohmae N, Iwasaki S, Shinkai Y."Mammalian HEMK1 methylates glutamine residue of the GGQ motif of mitochondrial release factors."Sci Rep. 2022 12(1):4104.[pubmed]
  48. Kim WE, Ishikawa F, Re RN, Suzuki T, Dohmae N, Kakeya H, Tanabe G, Burkart MD."Developing crosslinkers specific for epimerization domain in NRPS initiation modules to evaluate mechanism."RSC Chem Biol. 2022 3:312–319.[pubmed]
  49. Nagao R, Yokono M, Ueno Y, Nakajima Y, Suzuki T, Kato KH, Tsuboshita N, Dohmae N, Shen JR, Ehira S, Akimoto S."Excitation-energy transfer in heterocysts isolated from the cyanobacterium Anabaena sp. PCC 7120 as studied by time-resolved fluorescence spectroscopy."Biochim Biophys Acta Bioenerg. 2022 1863(1):148509.[pubmed]
  50. Maruyama S, Sawano K, Amaki S, Suzuki T, Narita S, Kimura K, Arakawa T, Yamada C, Ito Y, Dohmae N, Fujita K, Ishiwata A, Fushinobu S."Substrate complex structure, active site labeling and catalytic role of the zinc ion in cysteine glycosidase."Glycobiology. 2022 32(2):171-180. [pubmed]
  51. Chhipi-Shrestha JK, Schneider-Poetsch T, Suzuki T, Mito M, Khan K, Dohmae N, Iwasaki S, Yoshida M."Splicing modulators elicit globaltranslational repression by condensate-proneproteins translated from introns"Cell Chem Biol. 2022 29(2):259-275.e10.[pubmed]
  52. Ishikawa F, Konno S, Uchida C, Suzuki T, Takashima K, Dohmae N, Kakeya H, Tanabe G."Chemoproteomics profiling of surfactin-producing nonribosomal peptide synthetases in living bacterial cells"Cell Chem Biol. 2022 29(1):145-156. [pubmed]

    53. 2021

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  53. Uemura T, Suzuki T, Dohmae N, Waguri S."Clathrin adapters AP-1 and GGA2 support expression of epidermal growth factor receptor for cell growth."Oncogenesis. 2021 10(11):80. [pubmed]
  54. Nomura Y, Dohmae N."Discovery of a small protein-encoding cis-regulatory overlapping gene of the tumor suppressor gene Scribble in humans"Communications Biology. 2021 4(1):1098.[pubmed]
  55. Ahmadi P, Muguruma K, Chang TC, Tamura S, Tsubokura K, Egawa Y, Suzuki T, Dohmae N, Nakao Y, Tanaka K." In vivo metal-catalyzed SeCT therapy by a proapoptotic peptide"Chemical Science. 2021 12(37):12266-12273.[pubmed]
  56. Sakai M, Takahashi N, Ikeda H, Furutani Y, Higuchi S, Suzuki T, Dohmae N, Kobayashi S, Harada H, Kojima S, Matsuura T, Hattori A, Kakeya H."Design, synthesis, and target identification of new hypoxia-inducible factor 1 (HIF-1) inhibitors containing 1-alkyl-1H-pyrazole-3-carboxamide moiety."Bioorg Med Chem. 2021 46:116375.[pubmed]
  57. Yokota-Imai S, Chida S, Suzuki T, Dohmae N, Gotoh T."Comparative study of the microstructure of solid rubber from Ficus carica and Hevea brasiliensis"Polymers for Advanced Technologies. 2021 32(11):4397-4405[DOI]
  58. Kobayashi T, Nguyen-Tien D, Sorimachi Y, Sugiura Y, Suzuki T, Karyu H, Shimabukuro-Demoto S, Uemura T, Okamura T, Taguchi T, Ueki K, Kato N, Goda N, Dohmae N, Takubo K, Suematsu M, Toyama-Sorimachi N."SLC15A4 mediates M1-prone metabolic shifts in macrophages and guards immune cells from metabolic stress"Proc Natl Acad Sci U S A. 2021 118(33):e2100295118.[pubmed]
  59. Kawakami K, Nagao R, Tahara YO, Hamaguchi T, Suzuki T, Dohmae N, Kosumi D, Shen JR, Miyata M, Yonekura K, Kamiya N."Structural implications for a phycobilisome complex from the thermophilic cyanobacterium Thermosynechococcus vulcanus." Biochim Biophys Acta Bioenerg. 2021 1862(9):148458. [pubmed]
  60. Fukuda K, Shimura C, Miura H, Tanigawa A, Suzuki T, Dohmae N, Hiratani I, Shinkai Y."Regulation of mammalian 3D genome organization and histone H3K9 dimethylation by H3K9 methyltransferases." Commun Biol. 2021 4(1):571. [pubmed]
  61. Mori K, Suzuki T, Miura K, Dohmae N, Simizu S."Involvement of LH3 and GLT25D1 for glucosyl-galactosyl-hydroxylation on non-collagen-like domain of FGL1." Biochem Biophys Res Commun. 2021 560:93. [pubmed]
  62. Su T, Qin XY, Dohmae N, Wei F, Furutani Y, Kojima S, Yu W."Inhibition of Ganglioside Synthesis Suppressed Liver Cancer Cell Proliferation through Targeting Kinetochore Metaphase Signaling." Metabolites. 2021 11(3):167. [pubmed]
  63. Davydova E, Shimazu T, Schuhmacher MK, Jakobsson ME, Willemen HLDM, Liu T, Moen A, Ho AYY, Małecki J, Schroer L, Pinto R, Suzuki T, Grønsberg IA, Sohtome Y, Akakabe M, Weirich S, Kikuchi M, Olsen JV, Dohmae N, Umehara T, Sodeoka M, Siino V, McDonough MA, Eijkelkamp N, Schofield CJ, Jeltsch A, Shinkai Y, Falnes PØ."The methyltransferase METTL9 mediates pervasive 1-methylhistidine modification in mammalian proteomes." Nat Commun. 2021 12(1):891. [pubmed]
  64. Yoshimoto S, Katayama K, Suzuki T, Dohmae N, Simizu S."Regulation of N-glycosylation and secretion of Isthmin-1 by its C-mannosylation." Biochim Biophys Acta Gen Subj. 2021 1865(3):129840. [pubmed]
  65. Pan C, Kuranaga T, Cao X, Suzuki T, Dohmae N, Shinzato N, Onaka H, Kakeya H."Amycolapeptins A and B, Cyclic Nonadepsipeptides Produced by Combined Culture of Amycolatopsis sp. and Tsukamurella pulmonis." J Org Chem. 2021 86(2):1843-1849. [pubmed]
  66. Mukai K, Ogawa E, Uematsu R, Kuchitsu Y, Kiku F, Uemura T, Waguri S, Suzuki T, Dohmae N, Arai H, Shum AK, Taguchi T."Homeostatic regulation of STING by retrograde membrane traffic to the ER." Nat Commun. 2021 12(1):61. [pubmed]
  67. Kobayashi M, Watanabe K, Suzuki T, Dohmae N, Fujiyoshi M, Uchida M, Suzuki T, Igarashi K, Ishii I."Analysis of the acrolein-modified sites of apolipoprotein B-100 in LDL." Biochim Biophys Acta Mol Cell Biol Lipids. 2021 1866(1):158809.[pubmed]

    68. 2020

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  68. Miura K, Suzuki T, Sun H, Takada H, Ishizawa Y, Mizuta H, Dohmae N, Simizu S."Requirement for C-mannosylation to be secreted and activated a disintegrin and metalloproteinase with thrombospondin motifs 4 (ADAMTS4)." Biochim Biophys Acta Gen Subj. 2020 1865(3):129833. [pubmed]
  69. Nagao R, Yokono M, Ueno Y, Suzuki T, Kumazawa M, Kato KH, Tsuboshita N, Dohmae N, Ifuku K, Shen JR, Akimoto S."Enhancement of excitation-energy quenching in fucoxanthin chlorophyll a/c-binding proteins isolated from a diatom Phaeodactylum tricornutum upon excess-light illumination." Biochim Biophys Acta Bioenerg. 2020 1862(2):148350.[pubmed]
  70. Malay AD, Suzuki T, Katashima T, Kono N, Arakawa K, Numata K."Spider silk self-assembly via modular liquid-liquid phase separation and nanofibrillation." Sci Adv. 2020 6(45):eabb6030.[pubmed]
  71. Ko K, Suzuki T, Ishikawa R, Hattori N, Ito R, Umehara K, Furihata T, Dohmae N, Linhardt RJ, Igarashi K, Toida T, Higashi K."Ischemic stroke disrupts the endothelial glycocalyx through activation of proHPSE via acrolein exposure." J Biol Chem. 2020 295(52):18614.[pubmed]
  72. Uemura T, Suzuki T, Ko K, Nakamura M, Dohmae N, Sakamoto A, Terui Y, Toida T, Kashiwagi K, Igarashi K."Structural change and degradation of cytoskeleton due to the acrolein conjugation with vimentin and actin during brain infarction." Cytoskeleton (Hoboken). 2020 77(10):414-421.[pubmed]
  73. Nagao R, Yokono M, Ueno Y, Suzuki T, Kato K, Kato KH, Tsuboshita N, Jiang TY, Dohmae N, Shen JR, Ehira S, Akimoto S."Molecular organizations and function of iron-stress-induced-a protein family in Anabaena sp. PCC 7120." Biochim Biophys Acta Bioenerg. 2020 1862(1):148327.[pubmed]
  74. Takashima K, Nagao S, Kizawa A, Suzuki T, Dohmae N, Hihara Y."The role of transcriptional repressor activity of LexA in salt-stress responses of the cyanobacterium Synechocystis sp. PCC 6803." Sci Rep. 2020 10(1):17393.[pubmed]
  75. Harada Y, Nakajima K, Suzuki T, Fukushige T, Kondo K, Seino J, Ohkawa Y, Suzuki T, Inoue H, Kanekura T, Dohmae N, Taniguchi N, Maruyama I."Glycometabolic Regulation of the Biogenesis of Small Extracellular Vesicles." Cell Rep. 2020 33(2):108261.[pubmed]
  76. Takahashi H, Dohmae N, Kim KS, Shimuta K, Ohnishi M, Yokoyama S, Yanagisawa T."Genetic incorporation of non-canonical amino acid photocrosslinkers in Neisseria meningitidis: New method provides insights into the physiological function of the function-unknown NMB1345 protein." PLoS One. 2020 15(8):e0237883.[pubmed]
  77. Yun CS, Nishimoto K, Motoyama T, Shimizu T, Hino T, Dohmae N, Nagano S, Osada H."Unique features of the ketosynthase domain in a non-ribosomal peptide synthetase-polyketide synthase hybrid enzyme, tenuazonic acid synthetase 1." J Biol Chem. 2020 295(33):11602-11612.[pubmed]
  78. Saloura V, Vougiouklakis T, Bao R, Kim S, Baek S, Zewde M, Bernard B, Burkitt K, Nigam N, Izumchenko E, Dohmae N, Hamamoto R, Nakamura Y."WHSC1 monomethylates histone H1 and induces stem-cell like features in squamous cell carcinoma of the head and neck." Neoplasia. 2020 22(8):283-293.[pubmed]
  79. Osada Y, Suzuki T, Mizuta H, Mori K, Miura K, Dohmae N, Simizu S."The fibrinogen C-terminal domain is seldom C-mannosylated but its C-mannosylation is important for the secretion of microfibril-associated glycoprotein 4." Biochim Biophys Acta Gen Subj. 2020 1864(9):129637. [pubmed]
  80. Miyakawa R, Sato A, Matsuda Y, Saito A, Abe F, Matsumura H, Odaka M, Suzuki T, Dohmae N, Komatsuda A, Takahashi N, Wakui H."Comparative proteomic analysis of renal proteins from IgA nephropathy model mice and control mice." Clin Exp Nephrol. 2020 24(8):666-679.[pubmed]
  81. Iwashita S, Suzuki T, Kiriyama Y, Dohmae N, Ohka Y, Song SY, Nakashima K."Overcoming off-targets: Assessing western blot signals for Bcnt/Cfdp1, a tentative component of the chromatin remodeling complex." Biosci Rep. 2020 40(6):BSR20194012[pubmed]
  82. Nagao R, Kato K, Ifuku K, Suzuki T, Kumazawa M, Uchiyama I, Kashino Y, Dohmae N, Akimoto S, Shen JR, Miyazaki N, Akita F."Structural basis for assembly and function of a diatom photosystem I-light harvesting supercomplex." Nat Commun. 2020 11(1):2481.[pubmed]
  83. Nakamura R, Numata T, Kasuya G, Yokoyama T, Nishizawa T, Kusakizako T, Kato T, Hagino T, Dohmae N, Inoue M, Watanabe K, Ichijo H, Kikkawa M, Shirouzu M, Jentsch TJ, Ishitani R, Okada Y, Nureki O."Cryo-EM structure of the volume-regulated anion channel LRRC8D isoform identifies features important for substrate permeation."Commun Biol. 2020 3(1):240.[pubmed]
  84. Akita F, Nagao R, Kato K, Nakajima Y, Yokono M, Ueno Y, Suzuki T, Dohmae N, Shen JR, Akimoto S, Miyazaki N."Structure of a cyanobacterial photosystem I surrounded by octadecameric IsiA antenna proteins."Commun Biol. 2020 3(1):232.[pubmed]
  85. Murakami H, Suzuki T, Tsuchiya K, Gatanaga H, Taura M, Kudo E, Okada S, Takei M, Kuroda K, Yamamoto T, Hagiwara K, Dohmae N, Aida Y."Protein Arginine N-methyltransferases 5 and 7 Promote HIV-1 Production."Viruses. 2020 12(3):E355. [pubmed]
  86. Yamaguchi S, Oe A, Nishida KM, Yamashita K, Kajiya A, Hirano S, Matsumoto N, Dohmae N, Ishitani R, Saito K, Siomi H, Nishimasu H, Siomi MC, Nureki O."Crystal structure of Drosophila Piwi."Nat Commun. 2020 11(1):858.[pubmed]
  87. Kishi J, Inuki S, Kashiwabara E, Suzuki T, Dohmae N, Fujimoto Y."Design and Discovery of Covalent α-GalCer Derivatives as Potent CD1d Ligands."ACS Chem Biol. 2020 15 (2), 353-359. [pubmed]
  88. Kato K, Shinoda T, Nagao R, Akimoto S, Suzuki T, Dohmae N, Chen M, Allakhverdiev SI, Shen JR, Akita F, Miyazaki N, Tomo T."Structural basis for the adaptation and function of chlorophyll f in photosystem I."Nat Commun. 2020 11(1):238[pubmed]
  89. Deng X, Dohmae N, Kaksonen AH, Okamoto A."Biogenic Iron Sulfide Nanoparticles to Enable Extracellular Electron Uptake in Sulfate-Reducing Bacteria."Angew Chem Int Ed Engl.2020 59:5995–5999.[pubmed]
  90. Kitajima-Ihara T, Suzuki T, Nakamura S, Shimada Y, Nagao R, Dohmae N, Noguchi T."Fourier transform infrared and mass spectrometry analyses of a site-directed mutant of D1-Asp170 as a ligand to the water-oxidizing Mn4CaO5 cluster in photosystem II."Biochim Biophys Acta Bioenerg. 2020 1861(1):148086.[pubmed]
  91. Kong L, Aoyagi H, Yang Z, Ouyang T, Matsuda M, Fujimoto A, Watashi K, Suzuki R, Arita M, Yamagoe S, Dohmae N, Suzuki T, Suzuki T, Muramatsu M, Wakita T, Aizaki H."Surfeit 4 contributes to the replication of hepatitis C virus using double membrane vesicles."J Virol. 2020 94(2).e00858-19[pubmed]

    92. 2019

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  92. Matsuura R, Inabe K, Otsuki H, Kurokawa K, Dohmae N, Aida Y."Three YXXL Sequences of a Bovine Leukemia Virus Transmembrane Protein are Independently Required for Fusion Activity by Controlling Expression on the Cell Membrane."Viruses 2019 11(12). pii: E1140.[pubmed]
  93. Nakayama H, Yamauchi Y, Nobe Y, Sato K, Takahashi N, Shalev-Benami M, Isobe T, Taoka M."Method for Direct Mass-Spectrometry-Based Identification of Monomethylated RNA Nucleoside Positional Isomers and Its Application to the Analysis of Leishmania rRNA."Anal Chem. 2019 91(24):15634-15643.[pubmed]
  94. Nakashima K, Iwashita S, Suzuki T, Kato C, Kohno T, Kamei Y, Sasaki M, Urayama O, Ohno-Iwashita Y, Dohmae N, Song SY."A spatial similarity of stereochemical environments formed by amino acid residues defines a common epitope of two non-homologous proteins."Sci Rep. 2019 9(1):14818.[pubmed]
  95. Yoshimura A, Nishimura S, Suzuki T, Hattori A, Dohmae N, Kato T, Kakeya H."Isolation, Structure Elucidation, and Conformational Regulation of Myropeptins, Lipopeptides from the Fungus Myrothecium roridum."Org Lett. 2019 21(18):7524-7528.[pubmed]
  96. Takase S, Kurokawa R, Kondoh Y, Honda K, Suzuki T, Kawahara T, Ikeda H, Dohmae N, Osada H, Shin-Ya K, Kushiro T, Yoshida M, Matsumoto K."Mechanism of Action of Prethioviridamide, an Anticancer Ribosomally Synthesized and Post-Translationally Modified Peptide with a Polythioamide Structure."ACS Chem Biol. 2019 14(8):1819-1828[pubmed]
  97. Nagao R, Kato K, Suzuki T, Ifuku K, Uchiyama I, Kashino Y, Dohmae N, Akimoto S, Shen JR, Miyazaki N, Akita F."Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex."Nature Plants. 2019 5：890-901.[pubmed]
  98. Ishizawa Y, Niwa Y, Suzuki T, Kawahara R, Dohmae N, Simizu S."Identification and characterization of collagen-like glycosylation and hydroxylation of CCN1."Glycobiology. 2019 29(10):696-704.[pubmed]
  99. Yamamoto M, Harada Y, Suzuki T, Fukushige T, Yamakuchi M, Kanekura T, Dohmae N, Hori K, Maruyama I."Application of high-mannose-type glycan-specific lectin from Oscillatoria Agardhii for affinity isolation of tumor-derived extracellular vesicles." Anal Biochem. 2019 580：21-29.[pubmed]
  100. Uemura T, Suzuki T, Ko K, Watanabe K, Dohmae N, Sakamoto A, Terui Y, Toida T, Kashiwagi K, Igarashi K."Inhibition of dendritic spine extension through acrolein conjugation with α-, β-tubulin proteins." Int J Biochem Cell Biol. 2019 113：58-66.[pubmed]
  101. Nonaka S, Sono M, Hoshi C, Kanetani T, Nakayama H, Dohmae N, Nakanishi Y."Transcription repressor-mediated control of engulfment receptor expression in Drosophila phagocytes." Exp Cell Res. 2019 381(10)：10-17.[pubmed]
  102. Nagamura R, Fukuda M, Kawamoto A, Matoba K, Dohmae N, Ishitani R, Takagi J, Nureki O. "Structural basis for oligomerization of the prokaryotic peptide transporter PepTSo2." Acta Crystallogr F 2019 75(Pt 5):348-358. [pubmed]
  103. Mizuta H, Kuga K, Suzuki T, Niwa Y, Dohmae N, Simizu S. "C‑mannosylation of R‑spondin2 activates Wnt/β‑catenin signaling and migration activity in human tumor cells." Int J Oncol. 2019 54(6):2127-2138.[pubmed]
  104. Yatagai F, Honma M, Dohmae N, Ishioka N. "Biological effects of space environmental factors: A possible interaction between space radiation and microgravity." Life Sci Space Res (Amst). 2019 20:113-123[pubmed]
  105. Harada Y, Suzuki T, Fukushige T, Kizuka Y, Yagi H, Yamamoto M, Kondo K, Inoue H, Kato K, Taniguchi N, Kanekura T, Dohmae N, Maruyama I. "Generation of the heterogeneity of extracellular vesicles by membrane organization and sorting machineries." Biochim Biophys Acta Gen Subj. 2019 1863(4):681-691[pubmed]
  106. Kori S, Ferry L, Matano S, Jimenji T, Kodera N, Tsusaka T, Matsumura R, Oda T, Sato M, Dohmae N, Ando T, Shinkai Y, Defossez PA, Arita K. "Structure of the UHRF1 Tandem Tudor Domain Bound to a Methylated Non-histone Protein, LIG1, Reveals Rules for Binding and Regulation." Structure 2019 27(3):485-496.e7. [pubmed]
  107. Nakamura H, Hirabayashi K, Miyakawa T, Kikuzato K, Hu W, Xu Y, Jiang K, Takahashi I, Niiyama R, Dohmae N, Tanokura M, Asami T. "Triazole ureas covalently bind to strigolactone receptor and antagonize strigolactone responses." Mol Plant. 2019 12(1):44-58 [pubmed]
  108. Nagao R, Ueno Y, Akita F, Suzuki T, Dohmae N, Akimoto S, Shen JR. "Biochemical characterization of photosystem I complexes having different subunit compositions of fucoxanthin chlorophyll a/c-binding proteins in the diatom Chaetoceros gracilis." Photosynth Res. 2019 140(2):141-149.[pubmed]
  109. Izumikawa K, Nobe Y, Ishikawa H, Yamauchi Y, Taoka M, Sato K, Nakayama H, Simpson RJ, Isobe T, Takahashi N. "TDP-43 regulates site-specific 2'-O-methylation of U1 and U2 snRNAs via controlling the Cajal body localization of a subset of C/D scaRNAs." Nucleic Acids Res. 2019 47(5):2487-2505.[pubmed]

    110. 2018

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  110. Tomo T, Okumura A, Suzuki T, Okuhara M, Katayama R, Isayama N, Nagao R, Iwai M, Dohmae N, Enami I. "Lysyl oxidase-like protein secreted from an acidophilic red alga, Cyanidium caldarium." Plant Direct. 2018 2(10):e00084. [pubmed]
  111. Hatta T, Iemura SI, Ohishi T, Nakayama H, Seimiya H, Yasuda T, Iizuka K, Fukuda M, Takeda J, Natsume T, Horikawa Y. "Calpain-10 regulates actin dynamics by proteolysis of microtubule-associated protein 1B." Sci Rep.2018 8(1):16756 [pubmed]
  112. Tsusaka T, Kikuchi M, Shimazu T, Suzuki T, Sohtome Y, Akakabe M, Sodeoka M, Dohmae N, Umehara T, Shinkai Y. "Tri-methylation of ATF7IP by G9a/GLP recruits the chromodomain protein MPP8." Epigenetics Chromatin. 2018 11(1):56. [pubmed]
  113. Imada T, Moriya K, Uchiyama M, Inukai N, Hitotsuyanagi M, Masuda A, Suzuki T, Ayukawa S, Tagawa YI, Dohmae N, Kohara M, Yamamura M, Kiga D. "A highly bioactive Lys-deficient IFN leads to a site-specific di-PEGylated IFN with equivalent bioactivity to that of unmodified IFN-α2b." ACS Synth Biol. 2018 7(11):2537-2546[pubmed]
  114. Yoshida K, Muratani M, Araki H, Miura F, Suzuki T, Dohmae N, Katou Y, Shirahige K, Ito T, Ishii S. "Mapping of histone-binding sites in histone replacement-completed spermatozoa.s." Nat Commun. 2018 9(1):3885 [pubmed]
  115. Sugo M, Kimura H, Arasaki K, Amemiya T, Hirota N, Dohmae N, Imai Y, Inoshita T, Shiba-Fukushima K, Hattori N, Cheng J, Fujimoto T, Wakana Y, Inoue H, Tagaya M. "Syntaxin 17 regulates the localization and function of PGAM5 in mitochondrial division and mitophagy." EMBO J. 2018 37(21).[pubmed]
  116. Taoka M, Nobe Y, Yamaki Y, Sato K, Ishikawa H, Izumikawa K, Yamauchi Y, Hirota K, Nakayama H, Takahashi N, Isobe T. "Landscape of the complete RNA chemical modifications in the human 80S ribosome." Nucleic Acids Res. 2018 46(18):9289-9298.[pubmed]
  117. Kasuya G, Nakane T, Yokoyama T, Jia Y, Inoue M, Watanabe K, Nakamura R, Nishizawa T, Kusakizako T, Tsutsumi A, Yanagisawa H, Dohmae N, Hattori M, Ichijo H, Yan Z, Kikkawa M, Shirouzu M, Ishitani R, Nureki O. "Cryo-EM structures of the human volume-regulated anion channel LRRC8." Nat Struct Mol Biol. 2018 25(9):797-804.[pubmed]
  118. Nakamoto H, Amaya Y, Komatsu T, Suzuki T, Dohmae N, Nakamura Y, Jantan I, Miyata Y. "Stimulation of the ATPase activity of Hsp90 by zerumbone modification of its cysteine residues destabilizes its clients and causes cytotoxicity." Biochem J. 2018 475(15):2559-2576.[pubmed]
  119. Ogura A, Urano S, Tahara T, Nozaki S, Sibgatullina R, Vong K, Suzuki T, Dohmae N, Kurbangalieva A, Watanabe Y, Tanaka K. "A viable strategy for screening the effects of glycan heterogeneity on target organ adhesion and biodistribution in live mice." Chem Commun (Camb). 2018 54(63):8693-8696.[pubmed]
  120. Qin XY, Dohmae N, Kojima S. "Liver cancer stem cells: Identification and lipid metabolic reprogramming." Proc Natl Acad Sci U S A. 2018 115(28):E6390-E6391[pubmed]
  121. Arasaki K, Nagashima H, Kurosawa Y, Kimura H, Nishida N, Dohmae N, Yamamoto A, Yanagi S, Wakana Y, Inoue H, Tagaya M. "MAP1B-LC1 prevents autophagosome formation by linking syntaxin 17 to microtubules. " EMBO Rep. 2018 19(8) e45584.[pubmed]
  122. Takahashi F, Suzuki T, Osakabe Y, Betsuyaku S, Kondo Y, Dohmae N, Fukuda H, Yamaguchi-Shinozaki K, Shinozaki K. "A small peptide modulates stomatal control via abscisic acid in long-distance signalling. " Nature 2018 556(7700):235-238[pubmed]
  123. Yasuda T, Kagawa W, Ogi T, Kato TA, Suzuki T, Dohmae N, Takizawa K, Nakazawa Y, Genet MD, Saotome M, Hama M, Konishi T, Nakajima NI, Hazawa M, Tomita M, Koike M, Noshiro K, Tomiyama K, Obara C, Gotoh T, Ui A, Fujimori A, Nakayama F, Hanaoka F, Sugasawa K, Okayasu R, Jeggo PA, Tajima K "Novel function of HATs and HDACs in homologous recombination through acetylation of human RAD52 at double-strand break sites" PLoS Genet. 2018 14(3): e1007277[pubmed]
  124. Otani K, Niwa Y, Suzuki T, Sato N, Sasazawa Y, Dohmae N, Simizu S "Regulation of granulocyte colony-stimulating factor receptor-mediated granulocytic differentiation by C-mannosylation. " Biochem Biophys Res Commun. 2018 498(3):466-472[pubmed]
  125. Kawaichi S, Yamada T, Umezawa A, McGlynn SE, Suzuki T, Dohmae N, Yoshida T, Sako Y, Matsushita N, Hashimoto K, Nakamura R "Anodic and Cathodic Extracellular Electron Transfer by the Filamentous Bacterium Ardenticatena maritima 110S " Front Microbiol. 2018 9:68[pubmed]
  126. Xiao Deng, Naoshi Dohmae, Kenneth H. Nealson, Hashimoto K, Okamoto A. "Multi-heme cytochromes provide a pathway for survival in energy-limited environments " Sci Adv. 2018 4(2):eaao5682 [pubmed]
  127. Sengoku T, Suzuki T, Dohmae N, Watanabe C, Honma T, Hikida Y, Yamaguchi Y, Takahashi H, Yokoyama S, Yanagisawa T. "Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP. " Nat Chem Biol. 2018 14(4):368-374[pubmed]
  128. Niwa Y, Nakano Y, Suzuki T, Yamagishi M, Otani K, Dohmae N, Simizu S. "Topological analysis of DPY19L3, a human C-mannosyltransferase. " FEBS J. 2018 285(6):1162-1174[pubmed]
  129. Shimazu T, Furuse T, Balan S, Yamada I, Okuno S, Iwanari H, Suzuki T, Hamakubo T, Dohmae N, Yoshikawa T, Wakana S, Shinkai Y. "Role of METTL20 in regulating β-oxidation and heat production in mice under fasting or ketogenic conditions." Sci Rep. 2018 8(1):1179 [pubmed]
  130. Ishikawa H, Nobe Y, Izumikawa K, Taoka M, Yamauchi Y, Nakayama H, Simpson RJ, Isobe T, Takahash N. "Truncated forms of U2 snRNA (U2-tfs) are shunted toward a novel uridylylation pathway that differs from the degradation pathway for U1-tfs." RNA Biol. 2018 15(2):261-268[pubmed]
  131. Fujita-Yamaguchi Y, Bagramyan K, Yamaguchi Y, Ikeda A, Dohmae N, Hong TB, Kalkum M. "Mass spectrometric revival of an L-rhamnose- and D-galactose-specific lectin from a lost strain of Streptomyces." J Biol Chem. 2018 293(1)368-378 [pubmed]

    132. 2017

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  132. Nguyen MT, Uebele J, Kumari N, Nakayama H, Peter L, Ticha O, Woischnig A, Schmaler M, Khanna N, Dohmae N, Lee B, Bekeredjian-Ding I, Götz F. "Lipid moieties on lipoproteins of commensal and non-commensal staphylococci induce differential immune responses" Nat Commun. 2017 8(1):2246 [pubmed]
  133. Taichi M, Nomura S, Nakase I, Imamaki R, Kizuka Y, Ota F, Dohmae N, Kitazume S, Taniguchi N, Tanaka K. "In Situ Ligation of High- and Low-Affinity Ligands to Cell Surface Receptors Enables Highly Selective Recognition." Adv Sci. 2017 4(11) 1700147 [pubmed]
  134. Ishikawa H, Nobe Y, Izumikawa K, Taoka M, Yamauchi Y, Nakayama H, Simpson RJ, Isobe T, Takahash N. "Truncated forms of U2 snRNA (U2-tfs) are shunted toward a noveluridylylation pathway that differs from the degradation pathway for U1-tfs. " RNA Biol. 2017 1-8 [pubmed]
  135. Miyauchi H, Moriyama S, Kusakizako T, Kumazaki K, Nakane T, Yamashita K,Hirata K, Dohmae N, Nishizawa T, Ito K, Miyaji T, Moriyama Y, Ishitani R, Nureki O. "Structural basis for xenobiotic extrusion by eukaryotic MATE transporter." Nat Commun. 2017 8(1) 1633 [pubmed]
  136. Kasuya G, Yamaura T, Ma XB, Nakamura R, Takemoto M, Nagumo H, Tanaka E, Dohmae N, Nakane T, Yu Y, Ishitani R, Matsuzaki O, Hattori M, Nureki O. "Structural insights into the competitive inhibition of the ATP-gated P2X receptor channel. " Nat Commun. 2017 8(1):876 [pubmed]
  137. Daimon Y, Iwama Masui C, Tanaka Y, Shiota T, Suzuki T, Miyazaki R, Sakurada H, Lithgow T, Dohmae N, Mori H, Tsukazaki T, Narita SI, Akiyama Y. "The TPR domain of BepA is required for productive interaction with substrate proteins and the β-barrel assembly machinery (BAM) complex. " Mol Microbiol. 2017 106(5):760-76. [pubmed]
  138. Kwak HG, Suzuki T, Dohmae N. "Global mapping of post-translational modifications on histone H3 variants in mouse testes. " Biochem Biophys Rep. 2017 11:1-8 [pubmed]
  139. Hatanaka Y, Tsusaka T, Shimizu N, Morita K, Suzuki T, Machida S, Satoh M, Honda A, Hirose M, Kamimura S, Ogonuki N, Nakamura T, Inoue K, Hosoi Y, Dohmae N, Nakano T, Kurumizaka H, Matsumoto K, Shinkai Y, Ogura A. "Histone H3 Methylated at Arginine 17 Is Essential for Reprogramming the Paternal Genome in Zygotes. " Cell Rep. 2017 20(12) 2756-65 [pubmed]
  140. Deng X, Hamamoto R, Vougiouklakis T, Wang R, Yoshioka Y, Suzuki T, Dohmae N, Matsuo Y, Park JH, Nakamura Y. "Critical roles of SMYD2-mediated β-catenin methylation for nuclear translocation and activation of Wnt signaling. " Oncotarget. 2017 8:55837-47 [pubmed]
  141. Nagao R, Suzuki T, Dohmae N, Shen JR, Tomo T. "Functional role of Lys residues of Psb31 in electrostatic interactions with diatom photosystem II. " FEBS Lett. 2017 591(20):3259-64. [pubmed]
  142. Ferry L, Fournier A, Tsusaka T, Adelmant G, Shimazu T, Matano S, Kirsh O, Amouroux R, Dohmae N, Suzuki T, Filion GJ, Deng W, de Dieuleveult M, Fritsch L, Kudithipudi S, Jeltsch A, Leonhardt H, Hajkova P, Marto JA, Arita K, Shinkai Y, Defossez PA. "Methylation of DNA Ligase 1 by G9a/GLP Recruits UHRF1 to Replicating DNA and Regulates DNA Methylation. " Mol Cell. 2017 67(4):550-65 [pubmed]
  143. Izumikawa K, Nobe Y, Yoshikawa H, Ishikawa H, Miura Y, Nakayama H, Nonaka T, Hasegawa M, Egawa N, Inoue H, Nishikawa K, Yamano K, Simpson RJ, Taoka M, Yamauchi Y, Isobe T, Takahashi N. "TDP-43 stabilises the processing intermediates of mitochondrial transcripts." Sci Rep. 2017 7(1):7709 [pubmed]
  144. Morishita S, Suzuki T, Niwa Y, Dohmae N, Simizu S. "Dpy-19 like 3-mediated C-mannosylation and expression levels of RPE-spondin in human tumor cell lines. " Oncol Lett. 2017 14(2):2537-44 [pubmed]
  145. Tomita A, Zhang M, Jin F, Zhuang W, Takeda H, Maruyama T, Osawa M, Hashimoto KI, Kawasaki H, Ito K, Dohmae N, Ishitani R, Shimada I, Yan Z, Hattori M, Nureki O. "ATP-dependent modulation of MgtE in Mg2+ homeostasis. " Nat Commun. 2017 8(1):148 [pubmed]
  146. Konno S, Ishikawa F, Suzuki T, Dohmae N, Kakeya H, Tanabe G. "A chemoproteomics approach to investigate phosphopantetheine transferase activity at the cellular level. " Chembiochem. 2017 18(18):1855-62 [pubmed]
  147. Yoshioka Y, Suzuki T, Matsuo Y, Tsurita G, Watanabe T, Dohmae N, Nakamura Y, Hamamoto R. "Protein lysine methyltransferase SMYD3 is involved in tumorigenesis through regulation of HER2 homodimerization. " Cancer Med. 2017 6(7):1665-72 [pubmed]
  148. Nagao R, Suzuki T, Okumura A, Kihira T, Toda A, Dohmae N, Nakazato K, Tomo T. "Electrostatic interaction of positive charges on the surface of Psb31 with photosystem II in the diatom Chaetoceros gracilis. " Biochim Biophys Acta. 2017 1858(9):779-85 [pubmed]
  149. Uemura T, Suzuki T, Saiki R, Dohmae N, Ito S, Takahashi H, Toida T, Kashiwagi K, Igarashi K. "Activation of MMP-9 activity by acrolein in saliva from patients with primary Sjögren's syndrome and its mechanism. " Int J Biochem Cell Biol. 2017 88:84-91 [pubmed]
  150. Yamamoto YY, Uno Y, Sha E, Ikegami K, Ishii N, Dohmae N, Sekiguchi H, Sasaki YC, Yohda M. "Asymmetry in the function and dynamics of the cytosolic group II chaperonin CCT/TRiC. " PLoS One. 2017 12(5):e0176054. [pubmed]
  151. Yachie N, Robotic Biology Consortium, Natsume T. "Robotic crowd biology with Maholo LabDroids. " Nat Biotechnol. 2017 35(4):310-12 [pubmed]
  152. Wang R, Deng X, Yoshioka Y, Vougiouklakis T, Park JH, Suzuki T, Dohmae N, Ueda K, Hamamoto R, Nakamura Y. "Effects of SMYD2-mediated EML4-ALK methylation on the signaling pathway and growth in non-small cell lung cancer cells. " Cancer Sci. 2017 108(6):1203-09. [pubmed]
  153. Okamoto S, Murano T, Suzuki T, Uematsu S, Niwa Y, Sasazawa Y, Dohmae N, Bujo H, Simizu S. "Regulation of secretion and enzymatic activity of lipoprotein lipase by C-mannosylation." Biochem Biophys Res Commun. 2017 486(2):558-63. [pubmed]
  154. Kwak HG, Dohmae N. "An effective mass spectrometry-based strategy for characterizing histone H3K9 modifications ." Stem Cell Epigenetics. 2017 4: e1501. [PDF]
  155. Saloura V, Vougiouklakis T, Zewde M, Deng X, Kiyotani K, Park JH, Matsuo Y, Lingen M, Suzuki T, Dohmae N, Hamamoto R, Nakamura Y. "WHSC1L1-mediated EGFR mono-methylation enhances the cytoplasmic and nuclear oncogenic activity of EGFR in head and neck cancer." Sci Rep. 2017 7:40664. [pubmed]
  156. Ishikawa H, Yoshikawa H, Izumikawa K, Miura Y, Taoka M, Nobe Y, Yamauchi Y, Nakayama H, Simpson RJ, Isobe T, Takahashi N. "Poly(A)-specific ribonuclease regulates the processing of small-subunit rRNAs in human cells." Nucleic Acids Res. 2017 45(6):3437-47. [pubmed]
  157. Makino A, Abe M, Ishitsuka R, Murate M, Kishimoto T, Sakai S, Hullin-Matsuda F, Shimada Y, Inaba T, Miyatake H, Tanaka H, Kurahashi A, Pack CG, Kasai RS, Kubo S, Schieber NL, Dohmae N, Tochio N, Hagiwara K, Sasaki Y, Aida Y, Fujimori F, Kigawa T, Nishibori K, Parton RG, Kusumi A, Sako Y, Anderluh G, Yamashita M, Kobayashi T, Greimel P, Kobayashi T. "A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C." FASEB J. 2017 31(4):1301-22. [pubmed]

    158. 2016

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  158. Kasai S, Ishikawa F, Suzuki T, Dohmae N, Kakeya H. "A chemical proteomic probe for detecting native carrier protein motifs in nonribosomal peptide synthetases." Chem Commun (Camb). 2016 52(98):14129-32. [pubmed]
  159. Kwak HG, Dohmae N. "Characterization of post-translational modifications on lysine 9 of histone H3 variants in mouse testis using matrix-assisted laser desorption/ionization-in source decay." Rapid Commun Mass Spectrom. 2016 30(23): 2529–36. [pubmed]
  160. Yoshioka Y, Suzuki T, Matsuo Y, Nakakido M, Tsurita G, Simone C, Watanabe T, Dohmae N, Nakamura Y, Hamamoto R. "SMYD3-mediated lysine methylation in the PH domain is critical for activation of AKT1." Oncotarget. 2016 7(46):75023-37. [pubmed]
  161. Hirosawa M, Hayakawa K, Yoneda C, Arai D, Shiota H, Suzuki T, Tanaka S, Dohmae N, Shiota K. "Novel O-GlcNAcylation on Ser(40) of canonical H2A isoforms specific to viviparity." Sci Rep. 2016 6:31785. [pubmed]
  162. Shihoya W, Nishizawa T, Okuta A, Tani K, Dohmae N, Fujiyoshi Y, Nureki O, Doi T. "Activation mechanism of endothelin ETB receptor by endothelin-1." Nature. 2016 537(7620):363-68. [pubmed]
  163. Uemura T, Nakamura M, Sakamoto A, Suzuki T, Dohmae N, Terui Y, Tomitori H, Casero RA Jr, Kashiwagi K, Igarashi K. "Decrease in acrolein toxicity based on the decline of polyamine oxidases." Int J Biochem Cell Biol. 2016 79:151-57. [pubmed]
  164. Kwak HG, Dohmae N. "Proteomic characterization of histone variants in the mouse testis by mass spectrometry-based top-down analysis." Biosci Trends. 2016 10(5):357-64. [pubmed]
  165. Fujiwara M, Kato S, Niwa Y, Suzuki T, Tsuchiya M, Sasazawa Y, Dohmae N, Simizu S. "C-mannosylation of R-spondin3 regulates its secretion and activity of Wnt/β-catenin signaling in cells." FEBS Lett. 2016 590(16):2639-49. [pubmed]
  166. Taoka M, Nobe Y, Yamaki Y, Yamauchi Y, Ishikawa H, Takahashi N, Nakayama H. "The complete chemical structure of Saccharomyces cerevisiae rRNA:partial pseudouridylation of U2345 in 25S rRNA by snoRNA snR9." Nucleic Acids Res. 2016 44(18):8951-61. [pubmed]
  167. Tsuchiya H, Doki S, Takemoto M, Ikuta T, Higuchi T, Fukui K, Usuda Y, Tabuchi E, Nagatoishi S, Tsumoto K, Nishizawa T, Ito K, Dohmae N, Ishitani R, Nureki O. "Structural basis for amino acid export by DMT superfamily transporter YddG." Nature. 2016 534:417–20. [pubmed]
  168. Miyatake H, Sanjoh A, Murakami T, Murakami H, Matsuda G, Hagiwara K, Yokoyama M, Sato H, Miyamoto Y, Dohmae N, Aida Y. "Molecular Mechanism of HIV-1 Vpr for Binding to Importin-α." J Mol Biol. 2016 428(13):2744-57. [pubmed]
  169. Miyazaki R, Yura T, Suzuki T, Dohmae N, Mori H, Akiyama Y. "A Novel SRP Recognition Sequence in the Homeostatic Control Region of Heat Shock Transcription Factor σ(32)." Sci Rep. 2016 6:24147. [pubmed]
  170. Miyazaki S, Sasazawa Y, Mogi T, Suzuki T, Yoshida K, Dohmae N, Takao KI, Simizu S. "Identification of a seco-clavilactone B as a small-molecule actin polymerization inhibitor." FEBS Lett. 2016 590(8):1163-73. [pubmed]
  171. Piao L, Nakakido M, Suzuki T, Dohmae N, Nakamura Y, Hamamoto R. "Automethylation of SUV39H2, an oncogenic histone lysine methyltransferase, regulates its binding affinity to substrate proteins." Oncotarget. 2016 7(16):22846-56. [pubmed]
  172. Harada Y, Huang C, Yamaki S, Dohmae N, Suzuki T. "Non-lysosomal degradation of singly phosphorylated oligosaccharides initiated by the action of a cytosolic endo-β-N-acetylglucosaminidase." J Biol Chem. 2016 291(15):8048-58. [pubmed]
  173. Yanagisawa T, Takahashi H, Suzuki T, Masuda A, Dohmae N, Yokoyama S. "Neisseria meningitidis Translation Elongation Factor P and Its Active-Site Arginine Residue Are Essential for Cell Viability"PLoS ONE. 2016 11(2):e0147907. [pubmed]
  174. Kasuya G, Fujiwara Y, Takemoto M, Dohmae N, Nakada-Nakura Y, Ishitani R, Hattori M, Nureki O."Structural Insights into Divalent Cation Modulations of ATP-Gated P2X Receptor Channels." Cell Rep. 2016 14(4):932-44. [pubmed]
  175. Niwa Y, Suzuki T, Dohmae N, Simizu S."Identification of DPY19L3 as the C-mannosyltransferase of R-spondin1 in human cells." Mol Biol Cell. 2016 27(5):744-56. [pubmed]
  176. Kong L, Fujimoto A, Nakamura M, Aoyagi H, Matsuda M, Watashi K, Suzuki R, Arita M, Yamagoe S, Dohmae N, Suzuki T, Sakamaki Y, Ichinose S, Suzuki T, Wakita T, Aizaki H."Prolactin regulatory element binding protein is involved in hepatitis C virus replication compartment by interacting with NS4B." J Virol. 2016 90(6):3093-111. [pubmed]
  177. Yamauchi Y, Nobe Y, Izumikawa K, Higo D, Yamagishi Y, Takahashi N, Nakayama H, Isobe T, Taoka M."A mass spectrometry-based method for direct determination of pseudouridine in RNA." Nucleic Acids Res. 2016 44(6):e59. [pubmed]

    178. 2015

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  178. Kim JK, Son DW, Kim CH, Cho JH, Marchetti R, Silipo A, Sturiale L, Park HY, Huh YR, Nakayama H, Fukatsu T, Molinaro A, Lee BL."Insect Gut Symbiont Susceptibility to Host Antimicrobial Peptides Caused by Alteration of the Bacterial Cell Envelope." J Biol Chem. 2015 290(34):21042-53. [pubmed]
  179. Vougiouklakis T, Sone K, Saloura V, Cho HS, Suzuki T, Dohmae N, Alachkar H, Nakamura Y, Hamamoto R."SUV420H1 enhances the phosphorylation and transcription of ERK1 in cancer cells." Oncotarget. 2015 6(41):43162-71. [pubmed]
  180. Sasazawa Y, Sato N, Suzuki T, Dohmae N, Simizu S."C-mannosylation of thrombopoietin receptor (c-Mpl) regulates thrombopoietin-dependent JAK-STAT signaling." Biochem Biophys Res Commun. 2015 468(1-2):262-68. [pubmed]
  181. Ishikawa F, Suzuki T, Dohmae N, Kakeya H."A multiplex labeling strategy for nonribosomal peptide synthetases using active site-directed proteomic probes for adenylation domains." Chembiochem. 2015 16(18):2590–94. [pubmed]
  182. Deng X, Von Keudell G, Suzuki T, Dohmae N, Nakakido M, Piao L, Yoshioka Y, Nakamura Y, Hamamoto R."PRMT1 promotes mitosis of cancer cells through arginine methylation of INCENP." Oncotarget. 2015 6(34):35173-82. [pubmed]
  183. Nakakido M, Deng Z, Suzuki T, Dohmae N, Nakamura Y, Hamamoto R."PRMT6 increases cytoplasmic localization of p21CDKN1A in cancer cells through arginine methylation and makes more resistant to cytotoxic agents." Oncotarget. 2015 6(31):30957-67. [pubmed]
  184. Niwa Y, Suzuki T, Dohmae N, Simizu S."O-fucosylation of CCN1 is required for its secretion." FEBS Lett. 2015 589(21):3287–93. [pubmed]
  185. Yamanaka Y, Kato Y, Hashimoto K, Iida K, Nagasawa K, Nakayama H, Dohmae N, Noguchi K, Noguchi T, Yohda M, Odaka M."Time-Resolved Crystallography of the Reaction Intermediate of NitrileHydratase:Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile." Angew. Chem. Int. Ed. 2015 54(37):10763-67. [pubmed]
  186. Hirose T, Saiki R, Uemura T, Suzuki T, Dohmae N, Ito S, Takahashi H, Ishii I, Toida T, Kashiwagi K, Igarashi K."Increase in acrolein-conjugated immunoglobulins in saliva from patients with primary Sjogren's syndrome." Clin Chim Acta. 2015 450:184-89. [pubmed]
  187. Piao L, Suzuki T, Dohmae N, Nakamura Y, Hamamoto R."SUV39H2 methylates and stabilizes LSD1 by inhibiting polyubiquitination in human cancer cells." Oncotarget. 2015 6(19):16939-50. [pubmed]
  188. Iwashita S, Suzuki T, Yasuda T, Nakashima K, Sakamoto T, Kohno T, Takahashi I, Kobayashi T, Ohno-Iwashita Y, Imajoh-Ohmi S, Song SY, Dohmae N."Mammalian Bcnt/Cfdp1, a potential epigenetic factor characterized by an acidic stretch in the disordered N-terminal and Ser250 phosphorylation in the conserved C-terminal regions." Biosci Rep. 2015 35(4):e00228. [pubmed]
  189. Kuge T, Nagoya H, Tryfona T, Kurokawa T, Yoshimi Y, Dohmae N, Tsubaki K, Dupree P, Tsumuraya Y, Kotake T."Action of an endo-β-1,3(4)-glucanase on cellobiosyl unit structure in barley β-1,3:1,4-glucan." Biosci Biotechnol Biochem. 2015 79(11):1810-17. [pubmed]
  190. Ishikawa F, Konno S, Suzuki T, Dohmae N, Kakeya H."Profiling Nonribosomal Peptide Synthetase Activities Using Chemical Proteomic Probes for Adenylation Domains." ACS Chem Biol. 2015 10(9):1989-97. [pubmed]
  191. Taoka M, Nobe Y, Hori M, Takeuchi A, Masaki S, Yamauchi Y, Nakayama H, Takahashi N, Isobe T."A mass spectrometry-based method for comprehensive quantitative determination of post-transcriptional RNA modifications: the complete chemical structure of Schizosaccharomyces pombe ribosomal RNAs." Nucleic Acids Res. 2015 43(18):e115. [pubmed]
  192. Nakayama H, Yamauchi Y, Taoka M, Isobe T."Direct identification of human cellular microRNAs by nanoflow liquid chromatography-high-resolution tandem mass spectrometry and database searching." Anal Chem. 2015 87(5):2884-91. [pubmed]
  193. Nakakido M, Deng Z, Suzuki T, Dohmae N, Nakamura Y, Hamamoto R." Dysregulation of AKT Pathway by SMYD2-Mediated Lysine Methylation on PTEN." Neoplasia. 2015 17(4):367-73. [pubmed]
  194. Matsumoto N, Sato K, Nishimasu H, Namba Y, Miyakubi K, Dohmae N, Ishitani R, Siomi H, Siomi MC, Nureki O." Crystal Structure and Activity of the Endoribonuclease Domain of the piRNA Pathway Factor Maelstrom." Cell Rep. 2015 11(3):366-75. [pubmed]
  195. Shinagawa T, Huynh LM, Takagi T, Tsukamoto D, Tomaru C, Kwak HG, Dohmae N, Noguchi J, Ishii S." Disruption of Th2a and Th2b genes causes defects in spermatogenesis." Development. 2015 142(7):1287-92. [pubmed]
  196. Matsumoto S, Fischer ES, Yasuda T, Dohmae N, Iwai S, Mori T, Nishi R, Yoshino KI, Sakai W, Hanaoka F, Thoma NH, Sugasawa K." Functional regulation of the DNA damage-recognition factor DDB2 by ubiquitination and interaction with xeroderma pigmentosum group C protein." Nucleic Acids Res. 2015 43(3):1700-13. [pubmed]
  197. Miyatake H, Sanjoh A, Unzai S, Matsuda G, Tatsumi Y, Miyamoto Y, Dohmae N, Aida Y."Crystal Structure of Human Importin-α1 (Rch1), Revealing a Potential Autoinhibition Mode Involving Homodimerization." PLoS One. 2015 10(2):e0115995. [pubmed]
  198. Arasaki K, Shimizu H, Mogari H, Nishida N, Hirota N, Furuno A, Kudo Y, Baba M, Baba N, Cheng J, Fujimoto T, Ishihara N, Ortiz-Sandoval C, Barlow LD, Raturi A, Dohmae N, Wakana Y, Inoue H, Tani K, Dacks JB, Simmen T, Tagaya M." A Role for the Ancient SNARE Syntaxin 17 in Regulating Mitochondrial Division." Dev Cell. 2015 32(3):304-17. [pubmed]
  199. Huang C, Harada Y, Hosomi A, Masahara-Negishi Y, Seino J, Fujihira H, Funakoshi Y, Suzuki T, Dohmae N, Suzuki T. "Endo-β-N-acetylglucosaminidase forms N-GlcNAc protein aggregates during ERAD in Ngly1-defective cells"Proc Natl Acad Sci U S A. 2015 112:1398-403. [pubmed]
  200. Konno S, Ishikawa F, Suzuki T, Dohmae N, Burkart MD, Kakeya H. " Active site-directed proteomic probes for adenylation domains in nonribosomal peptide synthetases. " Chem Commun (Camb). 2015 51:2262-65. [pubmed]

    201. 2014

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  201. Ishikawa H, Nobe Y, Izumikawa K, Yoshikawa H, Miyazawa N, Terukina G, Kurokawa N, Taoka M, Yamauchi Y, Nakayama H, Isobe T, Takahashi N. " Identification of truncated forms of U1 snRNA reveals a novel RNA degradation pathway during snRNP biogenesis." Nucleic Acids Res. 2014 42(4):2708-24. [pubmed]
  202. Taoka M, Morofuji N, Yamauchi Y, Ojima H, Kubota D, Terukina G, Nobe Y, Nakayama H, Takahashi N, Kosuge T, Isobe T, Kondo T. "Global PROTOMAP profiling to search for biomarkers of early-recurrent hepatocellular carcinoma." J Proteome Res. 2014 13(11):4847-58 [pubmed]
  203. Taoka M, Ishikawa D, Nobe Y, Ishikawa H, Yamauchi Y, Terukina G, Nakayama H, Hirota K, Takahashi N, Isobe T."RNA Cytidine Acetyltransferase of Small-Subunit Ribosomal RNA: Identification of Acetylation Sites and the Responsible Acetyltransferase in Fission Yeast, Schizosaccharomyces pombe." PLoS One. 2014 9(11):e112156. [pubmed]
  204. Kumazaki K, Kishimoto T, Furukawa A, Mori H, Tanaka Y, Dohmae N, Ishitani R, Tsukazaki T, Nureki O. "Crystal structure of Escherichia coli YidC, a membrane protein chaperone and insertase." Sci Rep. 2014 4:7299. [pubmed]
  205. Staals RH, Zhu Y, Taylor DW, Kornfeld JE, Sharma K, Barendregt A, Koehorst JJ, Vlot M, Neupane N, Varossieau K, Sakamoto K, Suzuki T, Dohmae N, Yokoyama S, Schaap PJ, Urlaub H, Heck AJ, Nogales E, Doudna JA, Shinkai A, van der Oost J. "RNA Targeting by the Type III-A CRISPR-Cas Csm Complex of Thermus thermophilus." Mol Cell. 2014 56(4):518-30 [pubmed]
  206. Uematsu S, Goto Y, Suzuki T, Sasazawa Y, Dohmae N, Simizu S. "N-Glycosylation of extracellular matrix protein 1 (ECM1) regulates its secretion, which is unrelated to lipoid proteinosis." FEBS Open Bio. 2014 4:879-85 [pubmed]
  207. Kobayashi K, Suzuki T, Dohmae N, Ishitani R, Nureki O. "Crystallization and preliminary X-ray crystallographic analysis of YfcM: an important factor for EF-P hydroxylation." Acta Crystallogr F Struct Biol Commun. 2014 70:1236-39 [pubmed]
  208. Kumazaki K, Tsukazaki T, Nishizawa T, Tanaka Y, Kato HE, Nakada-Nakura Y, Hirata K, Mori Y, Suga H, Dohmae N, Ishitani R, Nureki O. "Crystallization and preliminary X-ray diffraction analysis of YidC, a membrane-protein chaperone and insertase from Bacillus halodurans." Acta Crystallogr F Struct Biol Commun. 2014 70:1056-60 [pubmed]
  209. Goto Y, Niwa Y, Suzuki T, Uematsu S, Dohmae N, Simizu S. "N-glycosylation is required for secretion and enzymatic activity of human hyaluronidase1."FEBS Open Bio. 2014 4:554-59 [pubmed]
  210. Goto Y, Niwa Y, Suzuki T, Dohmae N, Umezawa K, Simizu S."C-mannosylation of human hyaluronidase 1: Possible roles for secretion and enzymatic activity. "Int J Oncol. 2014 45:344-50 [pubmed]
  211. Hara M, Kirita A, Kondo W, Matsuura T, Nagatsuma K, Dohmae N, Ogawa S, Imajoh-Ohmi S, Friedman SL, Rifkin DB, Kojima S."LAP degradation product reflects plasma kallikrein-dependent TGF-beta activation in patients with hepatic fibrosis." Springerplus. 2014 3:221 [pubmed]
  212. Piao L, Kang D, Suzuki T, Masuda A, Dohmae N, Nakamura Y, Hamamoto R." The Histone Methyltransferase SMYD2 Methylates PARP1 and Promotes Poly(ADP-ribosyl)ation Activity in Cancer Cells." Neoplasia. 2014 16(3):257-64. [pubmed]
  213. Kumazaki K, Chiba S, Takemoto M, Furukawa A, Nishiyama K, Sugano Y, Mori T, Dohmae N, Hirata K, Nakada-Nakura Y, Maturana AD, Tanaka Y, Mori H, Sugita Y, Arisaka F, Ito K, Ishitani R, Tsukazaki T, Nureki O." Structural basis of Sec-independent membrane protein insertion by YidC." Nature. 2014 509(7501):516-20 [pubmed]
  214. Suzuki H, Nishizawa T, Tani K, Yamazaki Y, Tamura A, Ishitani R, Dohmae N, Tsukita S, Nureki O, Fujiyoshi Y." Crystal structure of a claudin provides insight into the architecture of tight junctions." Science. 2014 344(6181):304-07. [pubmed]
  215. Yamagata K, Goto Y, Nishimasu H, Morimoto J, Ishitani R, Dohmae N, Takeda N, Nagai R, Komuro I, Suga H, Nureki O. "Structural Basis for Potent Inhibition of SIRT2 Deacetylase by a Macrocyclic Peptide Inducing Dynamic Structural Change." Structure. 2014 22(2):345-52. [pubmed]
  216. Nishimasu H, Ran FA, Hsu PD, Konermann S, Shehata SI, Dohmae N, Ishitani R, Zhang F, Nureki O. "Crystal structure of cas9 in complex with guide RNA and target DNA. " Cell. 2014 156(5):935-49. [pubmed]

    217. 2013

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  217. Kim JK, Won YJ, Nikoh N, Nakayama H, Han SH, Kikuchi Y, Rhee YH, Park HY, Kwon JY, Kurokawa K, Dohmae N, Fukatsu T, Lee BL. "Polyester synthesis genes associated with stress resistance are involved in an insect-bacterium symbiosis." Proc Natl Acad Sci U S A. 2013 110(26):E2381-89. [pubmed]
  218. Masuda A, Dohmae N. "Examination of an absolute quantity of less than a hundred nanograms of proteins by amino acid analysis." Anal Bioanal Chem. 2013 405(25):8073-81. [pubmed]
  219. Nishizawa T, Kita S, Maturana AD, Furuya N, Hirata K, Kasuya G, Ogasawara S, Dohmae N, Iwamoto T, Ishitani R, Nureki O. "Structural Basis for the Counter-Transport Mechanism of a H+/Ca2+ Exchanger." Science. 2013 341(6142):168-72. [pubmed]
  220. Unoki M, Masuda A, Dohmae N, Arita K, Yoshimatsu M, Iwai Y, Fukui Y, Ueda K, Hamamoto R, Shirakawa M, Sasaki H, Nakamura Y. "Lysyl 5-hydroxylation, a novel histone modification, by Jumonji domain containing 6 (JMJD6)." J Biol Chem. 2013 288(9):6053-62. [pubmed]
  221. Ikeda Y, Yamagishi A, Komura M, Suzuki T, Dohmae N, Shibata Y, Itoh S, Koike H, Satoh K. "Two types of fucoxanthin-chlorophyll-binding proteins I tightly bound to the photosystem I core complex in marine centric diatoms." Biochim Biophys Acta. 2013 1827(4):529-39. [pubmed]
  222. Okumura A, Suzuki T, Miyatake H, Okabe T, Hashimoto Y, Miyakawa T, Zheng H, Unoki-Kubota H, Ohno H, Dohmae N, Kaburagi Y, Miyazaki Y, Tanokura M, Yamagoe S. "Leukocyte cell-derived chemotaxin 2 is a zinc-binding protein." FEBS Lett. 2013 587(5):404-09. [pubmed]
  223. Ogawa T, Noguchi K, Saito M, Nagahata Y, Kato H, Ohtaki A, Nakayama H, Dohmae N, Matsushita Y, Odaka M, Yohda M, Nyunoya H, Katayama Y. "Carbonyl sulfide hydrolase from Thiobacillus thioparus strain THI115 is one of the beta-carbonic anhydrase family enzymes." J Am Chem Soc. 2013 135(10):3818-25. [pubmed]
  224. Nozawa K, Ishitani R, Yoshihisa T, Sato M, Arisaka F, Kanamaru S, Dohmae N, Mangroo D, Senger B, Becker HD, Nureki O. "Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm." Nucleic Acids Res. 2013 41(6):3901-14. [pubmed]
  225. Kumagai A, Ando R, Miyatake H, Greimel P, Kobayashi T, Hirabayashi Y, Shimogori T, Miyawaki A. "A bilirubin-inducible fluorescent protein from eel muscle." Cell. 2013 153(7):1602-11. [pubmed]
  226. Nakamura M, Tomitori H, Suzuki T, Sakamoto A, Terui Y, Saiki R, Dohmae N, Igarashi K, Kashiwagi K. "Inactivation of GAPDH as one mechanism of acrolein toxicity." Biochem Biophys Res Commun. 2013 430(4):1265-71. [pubmed]
  227. Bhat HB, Kishimoto T, Abe M, Makino A, Inaba T, Murate M, Dohmae N, Kurahashi A, Nishibori K, Fujimori F, Greimel P, Ishitsuka R, Kobayashi T." Binding of a pleurotolysin ortholog from Pleurotus eryngii to sphingomyelin and cholesterol-rich membrane domains." J Lipid Res. 2013 54(10):2933-43. [pubmed]
  228. Nagao R, Takahashi S, Suzuki T, Dohmae N, Nakazato K, Tomo T." Comparison of oligomeric states and polypeptide compositions of fucoxanthin chlorophyll a/c-binding protein complexes among various diatom species." Photosynth Res. 2013 117(1-3):281-88. [pubmed]
  229. Narita S, Masui C, Suzuki T, Dohmae N, Akiyama Y." Protease homolog BepA (YfgC) promotes assembly and degradation of beta-barrel membrane proteins in Escherichia coli." Proc Natl Acad Sci U S A. 2013 110(38):E3612-21. [pubmed]
  230. Staals RH, Agari Y, Maki-Yonekura S, Zhu Y, Taylor DW, van Duijn E, Barendregt A, Vlot M, Koehorst JJ, Sakamoto K, Masuda A, Dohmae N, Schaap PJ, Doudna JA, Heck AJ, Yonekura K, van der Oost J, Shinkai A. "Structure and Activity of the RNA-Targeting Type III-B CRISPR-Cas Complex of Thermus thermophilus." Mol Cell. 2013 52(1)135-45. [pubmed]
  231. Nagao R, Suga M, Niikura A, Okumura A, Koua FH, Suzuki T, Tomo T, Enami I, Shen JR.: "Crystal structure of Psb31, a novel extrinsic protein of photosystem II from a marine centric diatom and implications for its binding and function." Biochemistry. 2013 52(38):6646-52. [pubmed]

    232. 2012

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  232. Yatagai F, Honma M, Ukai A, Omori K, Suzuki H, Shimazu T, Takahashi A, Ohnishi T, Dohmae N, Ishioka N. "Preliminary results of space experiment: Implications for the effects of space radiation and microgravity on survival and mutation induction in human cells" Advances in Space Research. 2012 49(3):479-86. [link]
  233. Yorisue T, Matsumura K, Hirota H, Dohmae N, Kojima S. "Possible molecular mechanisms of species recognition by barnacle larvae inferred from multi-specific sequencing analysis of proteinaceous settlement-inducing pheromone." Biofouling. 2012 28(6):605-11. [pubmed]
  234. Miyatake H, Dohmae N. "Real-Time Control of Nanoscale Protein Assembly for Further Crystallization Using a Solution Circulating Nanoaggregation Control Apparatus" Crystal Growth & Design. 2012 12(9):4466-72. [link]
  235. Fujii Y, Dohmae N, Takio K, Kawsar SM, Matsumoto R, Hasan I, Koide Y, Kanaly RA, Yasumitsu H, Ogawa Y, Sugawara S, Hosono M, Nitta K, Hamako J, Matsui T, Ozeki Y. "A lectin from the mussel Mytilus galloprovincialis has a highly novel primary structure and induces glycan-mediated cytotoxicity of globotriaosylceramide-expressing lymphoma cells." J Biol Chem. 2012 287(53):44772-83. [pubmed]
  236. Tada S, Andou T, Suzuki T, Dohmae N, Kobatake E, Ito Y. "Genetic PEGylation" PLoS ONE. 2012 7:e49235. [link]
  237. Khan MM, Simizu S, Suzuki T, Masuda A, Kawatani M, Muroi M, Dohmae N, Osada H. "Protein disulfide isomerase-mediated disulfide bonds regulate the gelatinolytic activity and secretion of matrix metalloproteinase-9." Exp Cell Res. 2012 318(8):904-14. [pubmed]
  238. Kurokawa K, Ryu KH, Ichikawa R, Masuda A, Kim MS, Lee H, Chae JH, Shimizu T, Saitoh T, Kuwano K, Akira S, Dohmae N, Nakayama H, Lee BL. "Novel bacterial lipoprotein structures conserved in low-GC content gram-positive bacteria are recognized by Toll-like receptor 2." J Biol Chem. 2012 287(16):13170-81. [pubmed]
  239. Okada R, Nagaosa K, Kuraishi T, Nakayama H, Yamamoto N, Nakagawa Y, Dohmae N, Shiratsuchi A, Nakanishi Y. "Apoptosis-dependent externalization and involvement in apoptotic cell clearance of DmCaBP1, an endoplasmic reticulum protein of Drosophila." J Biol Chem. 2012 287(16):3138-46. [pubmed]
  240. Matsumoto K, Nakayama H, Yoshimura M, Masuda A, Dohmae N, Matsumoto S, Tsujimoto M. "PRMT1 is required for RAP55 to localize to processing bodies." RNA Biol. 2012 9(5):610-23. [pubmed]
  241. Hirano Y, Suzuki T, Matsumoto T, Ishihara Y, Takaki Y, Kono M, Dohmae N, Tsuji S. "Disulphide linkage in mouse ST6Gal-I: determination of linkage positions and mutant analysis." J Biochem. 2012 151(2):197-203. [pubmed]
  242. Kurokawa K, Kim MS, Ichikawa R, Ryu KH, Dohmae N, Nakayama H, Lee BL. "Environment-mediated accumulation of diacyl lipoproteins over their triacyl counterparts in Staphylococcus aureus." J Bacteriol. 2012 194(13):3299-306. [pubmed]
  243. Kumazawa-Inoue K, Mimura T, Hosokawa-Tamiya S, Nakano Y, Dohmae N, Kinoshita-Toyoda A, Toyoda H, Kojima-Aikawa K. "ZG16p, an animal homolog of beta-prism fold plant lectins, interacts with heparan sulfate proteoglycans in pancreatic zymogen granules." Glycobiology. 2012 22(2):258-66. [pubmed]
  244. Nakayama H, Kurokawa K, Lee BL. "Lipoproteins in bacteria: structures and biosynthetic pathways." FEBS J. 2012 279(23):4247-68. [pubmed]
  245. Kawahara-Kobayashi A, Masuda A, Araiso Y, Sakai Y, Kohda A, Uchiyama M, Asami S, Matsuda T, Ishitani R, Dohmae N, Yokoyama S, Kigawa T, Nureki O, Kiga D. "Simplification of the genetic code: restricted diversity of genetically encoded amino acids." Nucleic Acids Res. 2012 40(20):10576-84. [pubmed]
  246. Ishii R, Isogaya K, Seto A, Koinuma D, Watanabe Y, Arisaka F, Yaguchi S, Ikushima H, Dohmae N, Miyazono K, Miyazawa K, Ishitani R, Nureki O. "Structure of a dominant-negative helix-loop-helix transcriptional regulator suggests mechanisms of autoinhibition." EMBO J. 2012 31(11):2541-52. [pubmed]
  247. Takawa M, Cho HS, Hayami S, Toyokawa G, Kogure M, Yamane Y, Iwai Y, Maejima K, Ueda K, Masuda A, Dohmae N, Field HI, Tsunoda T, Kobayashi T, Akasu T, Sugiyama M, Ohnuma S, Atomi Y, Ponder BA, Nakamura Y, Hamamoto R. "Histone lysine methyltransferase SETD8 promotes carcinogenesis by deregulating PCNA expression." Cancer Res. 2012 72(13):3217-27. [pubmed]
  248. Sato K, Ishiai M, Toda K, Furukoshi S, Osakabe A, Tachiwana H, Takizawa Y, Kagawa W, Kitao H, Dohmae N, Obuse C, Kimura H, Takata M, Kurumizaka H. "Histone chaperone activity of Fanconi anemia proteins, FANCD2 and FANCI, is required for DNA crosslink repair." EMBO J. 2012 31(17):3524-36. [pubmed]
  249. Cho HS, Hayami S, Toyokawa G, Maejima K, Yamane Y, Suzuki T, Dohmae N, Kogure M, Kang D, Neal DE, Ponder BA, Yamaue H, Nakamura Y, Hamamoto R. "RB1 methylation by SMYD2 enhances cell cycle progression through an increase of RB1 phosphorylation." Neoplasia. 2012 14(6):476-86. [pubmed]
  250. Niwa Y, Suzuki T, Dohmae N, Umezawa K, Simizu S. "Determination of cathepsin V activity and intracellular trafficking by N-glycosylation." FEBS Lett. 2012 586(20):3601-07. [pubmed]
  251. Nagao R, Tomo T, Noguchi E, Suzuki T, Okumura A, Narikawa R, Enami I, Ikeuchi M. "Proteases are associated with a minor fucoxanthin chlorophyll a/c-binding protein from the diatom, Chaetoceros gracilis." Biochim Biophys Acta. 2012 1817(12):2110-17. [pubmed]

    252. 2011

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  252. Nakayama H, Takahashi N, Isobe T. "Informatics for mass spectrometry-based RNA analysis." Mass Spectrom Rev. 2011 30(6):1000-12. [pubmed]
  253. Takahashi H, Suzuki T, Shirai A, Matsuyama A, Dohmae N, Yoshida M. "Mitochondrial localization of fission yeast manganese superoxide dismutase is required for its lysine acetylation and for cellular stress resistance and respiratory growth." Biochem Biophys Res Commun. 2011 406(1):42-46. [pubmed]
  254. Itoh K, Izumi A, Mori T, Dohmae N, Yui R, Maeda-Sano K, Shirai Y, Kanaoka MM, Kuroiwa T, Higashiyama T, Sugita M, Murakami-Murofushi K, Kawano S, Sasaki N. "DNA packaging proteins Glom and Glom2 coordinately organize the mitochondrial nucleoid of Physarum polycephalum." Mitochondrion. 2011 11(4):575-86. [pubmed]
  255. Nagamine T, Abe A, Suzuki T, Dohmae N, Matsumoto S. "Co-expression of four baculovirus proteins, IE1, LEF3, P143, and PP31, elicits a cellular chromatin-containing reticulate structure in the nuclei of uninfected cells." Virology. 2011 417(1):188-95. [pubmed]
  256. Echizen Y, Tsukazaki T, Dohmae N, Ishitani R, Nureki O. "Crystallization and preliminary X-ray diffraction of the first periplasmic domain of SecDF, a translocon-associated membrane protein, from Thermus thermophilus." Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 67(Pt 11):1367-70. [pubmed]
  257. Takahashi K, Suzuki T, Nishii W, Kubota K, Shibata C, Isobe T, Dohmae N. "A cysteine endopeptidase ("dionain") is involved in the digestive fluid of Dionaea muscipula (Venus's fly-trap)." Biosci Biotechnol Biochem. 2011 75(2):346-48. [pubmed]
  258. Nishimasu H, Okudaira S, Hama K, Mihara E, Dohmae N, Inoue A, Ishitani R, Takagi J, Aoki J, Nureki O. "Crystal structure of autotaxin and insight into GPCR activation by lipid mediators." Nat Struct Mol Biol. 2011 18(2):205-12. [pubmed]
  259. Asanuma M, Kurokawa K, Ichikawa R, Ryu KH, Chae JH, Dohmae N, Lee BL, Nakayama H. "Structural evidence of α-aminoacylated lipoproteins of Staphylococcus aureus." FEBS J. 2011 278(5):716-28. [pubmed]
  260. Cho HS, Suzuki T, Dohmae N, Hayami S, Unoki M, Yoshimatsu M, Toyokawa G, Takawa M, Chen T, Kurash JK, Field HI, Ponder BA, Nakamura Y, Hamamoto R. "Demethylation of RB regulator MYPT1 by histone demethylase LSD1 promotes cell cycle progression in cancer cells." Cancer Res. 2011 71(3):655-60. [pubmed]
  261. Ohnishi A, Hull JJ, Kaji M, Hashimoto K, Lee JM, Tsuneizumi K, Suzuki T, Dohmae N, Matsumoto S. "Hormone signaling linked to silkmoth sex pheromone biosynthesis involves Ca2+/calmodulin-dependent protein kinase II-mediated phosphorylation of the insect PAT family protein Bombyx mori lipid storage droplet protein-1 (BmLsd1)." J Biol Chem. 2011 286(27):24101-12. [pubmed]
  262. Masuda A, Dohmae N. "Amino acid analysis of sub-picomolar amounts of proteins by precolumn fluorescence derivatization with 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate." Biosci Trends. 2011 5(6):231-38. [pubmed]
  263. Yatagai F, Honma M, Takahashi A, Omori K, Suzuki H, Shimazu T, Seki M, Hashizume T, Ukai A, Sugasawa K, Abe T, Dohmae N, Enomoto S, Ohnishi T, Gordon A, Ishioka N. "Frozen human cells can record radiation damage accumulated during space flight: mutation induction and radioadaptation." Radiat Environ Biophys. 2011 50:125-34. [pubmed]

    264. 2010

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  264. Yu Y, Park JW, Kwon HM, Hwang HO, Jang IH, Masuda A, Kurokawa K, Nakayama H, Lee WJ, Dohmae N, Zhang J, Lee BL. "Diversity of innate immune recognition mechanism for bacterial polymeric meso-diaminopimelic acid-type peptidoglycan in insects." J Biol Chem. 2010 285(43):32937-45. [pubmed]
  265. Iwai M, Suzuki T, Kamiyama A, Sakurai I, Dohmae N, Inoue Y, Ikeuchi M. "The PsbK subunit is required for the stable assembly and stability of other small subunits in the PSII complex in the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1." Plant Cell Physiol. 2010 51(4):554-60. [pubmed]
  266. Suzuki MG, Imanishi S, Dohmae N, Asanuma M, Matsumoto S. "Identification of a male-specific RNA binding protein that regulates sex-specific splicing of Bmdsx by increasing RNA binding activity of BmPSI." Mol Cell Biol. 2010 30(24):5776-86. [pubmed]
  267. Sato Y, Shimizu S, Ohtaki A, Noguchi K, Miyatake H, Dohmae N, Sasaki S, Odaka M, Yohda M. "Crystal structures of the lumazine protein from Photobacterium kishitanii in complexes with the authentic chromophore, 6,7-dimethyl- 8-(1'-D-ribityl) lumazine, and its analogues, riboflavin and flavin mononucleotide, at high resolution." J Bacteriol. 2010 192(1):127-33. [pubmed]
  268. Nagao R, Suzuki T, Okumura A, Niikura A, Iwai M, Dohmae N, Tomo T, Shen JR, Ikeuchi M, Enami I. "Topological analysis of the extrinsic PsbO, PsbP and PsbQ proteins in a green algal PSII complex by cross-linking with a water-soluble carbodiimide." Plant Cell Physiol. 2010 51(5):718-27. [pubmed]
  269. Obata Y, Fukumoto Y, Nakayama Y, Kuga T, Dohmae N, Yamaguchi N. "The Lyn kinase C-lobe mediates Golgi export of Lyn through conformation-dependent ACSL3 association." J Cell Sci. 2010 123(Pt 15):2649-62. [pubmed]
  270. Masuda A, Dohmae N. "Automated Protein Hydrolysis Delivering Sample to a Solid Acid Catalyst for Amino Acid Analysis." Anal Chem. 2010 82(21):8939-45. [pubmed]
  271. Nagao R, Moriguchi A, Tomo T, Niikura A, Nakajima S, Suzuki T, Okumura A, Iwai M, Shen JR, Ikeuchi M, Enami I. "Binding and functional properties of five extrinsic proteins in oxygen-evolving photosystem II from a marine centric diatom, Chaetoceros gracilis." J Biol Chem. 2010 285(38):29191-99. [pubmed]
  272. Taoka M, Ikumi M, Nakayama H, Masaki S, Matsuda R, Nobe Y, Yamauchi Y, Takeda J, Takahashi N, Isobe T. "In-gel digestion for mass spectrometric characterization of RNA from fluorescently stained polyacrylamide gels." Anal Chem. 2010 82(18):7795-803. [pubmed]
  273. Kodama K, Nakayama H, Sakamoto K, Fukuzawa S, Kigawa T, Yabuki T, Kitabatake M, Takio K, Yokoyama S. "Site-specific incorporation of 4-iodo-L-phenylalanine through opal suppression." J Biochem. 2010 148(2):179-87. [pubmed]
  274. Saito K, Kagawa W, Suzuki T, Suzuki H, Yokoyama S, Saitoh H, Tashiro S, Dohmae N, Kurumizaka H. "The putative nuclear localization signal of the human RAD52 protein is a potential sumoylation site." J Biochem. 2010 147(6):833-42. [pubmed]
  275. Nakanishi T, Goto C, Kobayashi M, Kang W, Suzuki T, Dohmae N, Matsumoto S, Shimada T, Katsuma S. "Comparative studies of lepidopteran baculovirus-specific protein FP25K: development of a novel Bombyx mori nucleopolyhedrovirus-based vector with a modified fp25K gene." J Virol. 2010 84(10):5191-200. [pubmed]
  276. Sahlan M, Zako T, Tai PT, Ohtaki A, Noguchi K, Maeda M, Miyatake H, Dohmae N, Yohda M. "Thermodynamic characterization of the interaction between prefoldin and group II chaperonin." J Mol Biol. 2010 399(4):628-36. [pubmed]
  277. Ohtaki A, Murata K, Sato Y, Noguchi K, Miyatake H, Dohmae N, Yamada K, Yohda M, Odaka M. "Structure and characterization of amidase from Rhodococcus sp. N-771: Insight into the molecular mechanism of substrate recognition." Biochim Biophys Acta. 2010 1804(1):184-92. [pubmed]
  278. Yoshida M, Higashi K, Jin L, Machi Y, Suzuki T, Masuda A, Dohmae N, Suganami A, Tamura Y, Nishimura K, Toida T, Tomitori H, Kashiwagi K, Igarashi K. "Identification of acrolein-conjugated protein in plasma of patients with brain infarction." Biochem Biophys Res Commun. 2010 391(2):1234-39. [pubmed]
  279. Nagao R, Tomo T, Noguchi E, Nakajima S, Suzuki T, Okumura A, Kashino Y, Mimuro M, Ikeuchi M, Enami I. "Purification and characterization of a stable oxygen-evolving Photosystem II complex from a marine centric diatom, Chaetoceros gracilis." Biochim Biophys Acta. 2010 1797(2):160-66. [pubmed]
  280. Shimizu Y, Uchimura Y, Dohmae N, Saitoh H, Hanaoka F, Sugasawa K. "Stimulation of DNA glycosylase activities by XPC protein complex: roles of protein-protein interactions." Journal of Nucleic Acids. 2010 2010-07:805698. [link]

    281. 2009

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  281. Nakayama H, Akiyama M, Taoka M, Yamauchi Y, Nobe Y, Ishikawa H, Takahashi N, Isobe T. "Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data." Nucleic Acids Res. 2009 37(6):e47. [pubmed]
  282. Taoka M, Yamauchi Y, Nobe Y, Masaki S, Nakayama H, Ishikawa H, Takahashi N, Isobe T. "An analytical platform for mass spectrometry-based identification and chemical analysis of RNA in ribonucleoprotein complexes." Nucleic Acids Res. 2009 37(21):e140. [pubmed]
  283. Kurokawa K, Lee H, Roh KB, Asanuma M, Kim YS, Nakayama H, Shiratsuchi A, Choi Y, Takeuchi O, Kang HJ, Dohmae N, Nakanishi Y, Akira S, Sekimizu K, Lee BL. "The Triacylated ATP Binding Cluster Transporter Substrate-binding Lipoprotein of Staphylococcus aureus Functions as a Native Ligand for Toll-like Receptor 2." J Biol Chem. 2009 284(13):8406-11. [pubmed]
  284. Kametani F, Nonaka T, Suzuki T, Arai T, Dohmae N, Akiyama H, Hasegawa M. "Identification of casein kinase-1 phosphorylation sites on TDP-43." Biochem Biophys Res Commun. 2009 382(2):405-9. [pubmed]
  285. Nishimura K, Okudaira H, Ochiai E, Higashi K, Kaneko M, Ishii I, Nishimura T, Dohmae N, Kashiwagi K, Igarashi K. "Identification of proteins whose synthesis is preferentially enhanced by polyamines at the level of translation in mammalian cells." Int J Biochem Cell Biol. 2009 41(11):2251-61. [pubmed]
  286. Yonashiro R, Sugiura A, Miyachi M, Fukuda T, Matsushita N, Inatome R, Ogata Y, Suzuki T, Dohmae N, Yanagi S. "Mitochondrial ubiquitin ligase MITOL ubiquitinates mutant SOD1 and attenuates mutant SOD1-induced reactive oxygen species generation." Mol Biol Cell. 2009 20(21):4524-30. [pubmed]
  287. Kuraishi T, Nakagawa Y, Nagaosa K, Hashimoto Y, Ishimoto T, Moki T, Fujita Y, Nakayama H, Dohmae N, Shiratsuchi A, Yamamoto N, Ueda K, Yamaguchi M, Awasaki T, Nakanishi Y. "Pretaporter, a Drosophila protein serving as a ligand for Draper in the phagocytosis of apoptotic cells." EMBO J. 2009 28(24):3868-78. [pubmed]
  288. Okumura A, Suzuki T, Dohmae N, Okabe T, Hashimoto Y, Nakazato K, Ohno H, Miyazaki Y, Yamagoe S. "Identification and assignment of three disulfide bonds in mammalian leukocyte cell-derived chemotaxin 2 by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry." Biosci Trends. 2009 3(4):139-43. [pubmed]
  289. Yatagai F, Sugasawa K, Enomoto S, Honma M. "An approach to estimate radioadaptation from DSB repair efficiency." J Radiat Res. 2009 50(5):407-13. [pubmed]
  290. Arakawa T, Kawano Y, Katayama Y, Nakayama H, Dohmae N, Yohda M, Odaka M. "Structural basis for catalytic activation of thiocyanate hydrolase involving metal-ligated cysteine modification." J Am Chem Soc. 2009 131(41):14838-43. [pubmed]
  291. Iida T, Moteki Y, Nakamura K, Taguchi K, Otagiri M, Asanuma M, Dohmae N, Usami R, Kudo T. "Functional expression of three Rieske non-heme iron oxygenases derived from actinomycetes in Rhodococcus species for investigation of their degradation capabilities of dibenzofuran and chlorinated dioxins." Biosci Biotechnol Biochem. 2009 73(4):822-27. [pubmed]

    292. 2008

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  292. Enami I, Okumura A, Nagao R, Suzuki T, Iwai M, Shen JR. "Structures and functions of the extrinsic proteins of photosystem II from different species." Photosynth Res. 2008 98(1-3):349-63. [pubmed]
  293. Okumura A, Nagao R, Suzuki T, Yamagoe S, Iwai M, Nakazato K, Enami I. "A novel protein in Photosystem II of a diatom Chaetoceros gracilis is one of the extrinsic proteins located on lumenal side and directly associates with PSII core components." Biochim Biophys Acta. 2008 1777(12):1545-51. [pubmed]
  294. Yatagai F, Umebayashi Y, Honma M, Sugasawa K, Takayama Y, Hanaoka F. "Mutagenic radioadaptation in a human lymphoblastoid cell line." Mutat Res. 2008 638(1-2):48-55. [pubmed]
  295. Tsukazaki T, Mori H, Fukai S, Ishitani R, Mori T, Dohmae N, Perederina A, Sugita Y, Vassylyev DG, Ito K, Nureki O. "Conformational transition of Sec machinery inferred from bacterial SecYE structures." Nature. 2008 455(7215):988-91. [pubmed]
  296. Taniguchi K, Murata K, Murakami Y, Takahashi S, Nakamura T, Hashimoto K, Koshino H, Dohmae N, Yohda M, Hirose T, Maeda M, Odaka M. "Novel catalytic activity of nitrile hydratase from Rhodococcus sp. N771." J Biosci Bioeng. 2008 106(2):174-79. [pubmed]
  297. Ishitani R, Sugita Y, Dohmae N, Furuya N, Hattori M, Nureki O. "Mg2+-sensing mechanism of Mg2+ transporter MgtE probed by molecular dynamics study." Proc Natl Acad Sci U S A. 2008 105(40):15393-98. [pubmed]
  298. Tomo T, Kato Y, Suzuki T, Akimoto S, Okubo T, Noguchi T, Hasegawa K, Tsuchiya T, Tanaka K, Fukuya M, Dohmae N, Watanabe T, Mimuro M. "Characterization of highly purified photosystem I complexes from the chlorophyll d-dominated cyanobacterium Acaryochloris marina MBIC 11017." J Biol Chem. 2008 283(26):18198-209. [pubmed]
  299. Menon S, Tsuge T, Dohmae N, Takio K, Wei N. "Association of SAP130/SF3b-3 with Cullin-RING ubiquitin ligase complexes and its regulation by the COP9 signalosome." BMC Biochem. 2008 9:1. [pubmed]
  300. Yokoyama K, Nakagawa M, Satoh M, Saitoh S, Dohmae N, Harada A, Satoh N, Karasawa K, Takio K, Yanagida M, Inoue K. "Expression of a novel 90-kDa protein, Lsd90, involved in the metabolism of very long-chain fatty acid-containing phospholipids in a mitosis-defective fission yeast mutant." J Biochem. 2008 143(3):369-75. [pubmed]
  301. Fujibayashi A, Taguchi T, Misaki R, Ohtani M, Dohmae N, Takio K, Yamada M, Gu J, Yamakami M, Fukuda M, Waguri S, Uchiyama Y, Yoshimori T, Sekiguchi K. "Human RME-8 is involved in membrane trafficking through early endosomes." Cell Struct Funct. 2008 33(1):35-50. [pubmed]
  302. Hayashi M, Tamura Y, Dohmae N, Kojima S, Shimonaka M. "Plasminogen N-terminal activation peptide modulates the activity of angiostatin-related peptides on endothelial cell proliferation and migration." Biochem Biophys Res Commun. 2008 369(2):635-40. [pubmed]
  303. Suzuki MG, Imanishi S, Dohmae N, Nishimura T, Shimada T, Matsumoto S. "Establishment of a novel in vivo sex-specific splicing assay system to identify a trans-acting factor that negatively regulates splicing of Bombyx mori dsx female exons." Mol Cell Biol. 2008 28(1):333-43. [pubmed]
  304. Kuwasako K, Dohmae N, Inoue M, Shirouzu M, Taguchi S, Guntert P, Seraphin B, Muto Y, Yokoyama S. "Complex assembly mechanism and an RNA-binding mode of the human p14-SF3b155 spliceosomal protein complex identified by NMR solution structure and functional analyses." Proteins. 2008 71(4):1617-36. [pubmed]
  305. Araiso Y, Palioura S, Ishitani R, Sherrer RL, O'Donoghue P, Yuan J, Oshikane H, Dohmae N, Defranco J, Soll D, Nureki O. "Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation." Nucleic Acids Res. 2008 36(4):1187-99. [pubmed]
  306. Fukumoto Y, Dohmae N, Hanaoka F. "Schizosaccharomyces pombe Ddb1 recruits substrate-specific adaptor proteins through a novel protein motif, the DDB-box." Mol Cell Biol. 2008 28(22):6746-56. [pubmed]
  307. Kawatani M, Okumura H, Honda K, Kanoh N, Muroi M, Dohmae N, Takami M, Kitagawa M, Futamura Y, Imoto M, Osada H. "The identification of an osteoclastogenesis inhibitor through the inhibition of glyoxalase I." Proc Natl Acad Sci U S A. 2008 105(33):11691-96. [pubmed]

    308. 2007

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  308. Noji N, Nakamura T, Kitahata N, Taguchi K, Kudo T, Yoshida S, Tsujimoto M, Sugiyama T, Asami T. "Simple and sensitive method for pyrroloquinoline quinone (PQQ) analysis in various foods using liquid chromatography/electrospray-ionization tandem mass spectrometry." J Agric Food Chem. 2007 55(18):7258-63. [pubmed]
  309. Sahara N, Maeda S, Murayama M, Suzuki T, Dohmae N, Yen SH, Takashima A. "Assembly of two distinct dimers and higher-order oligomers from full-length tau." Eur J Neurosci. 2007 25(10):3020-29. [pubmed]
  310. Nagao R, Ishii A, Tada O, Suzuki T, Dohmae N, Okumura A, Iwai M, Takahashi T, Kashino Y, Enami I. "Isolation and characterization of oxygen-evolving thylakoid membranes and photosystem II particles from a marine diatom Chaetoceros gracilis." Biochim Biophys Acta. 2007 1767(12):1353-62. [pubmed]
  311. Okumura A, Sano M, Suzuki T, Tanaka H, Nagao R, Nakazato K, Iwai M, Adachi H, Shen JR, Enami I. "Aromatic structure of tyrosine-92 in the extrinsic PsbU protein of red algal photosystem II is important for its functioning." FEBS Lett. 2007 581(27):5255-58. [pubmed]
  312. Iwai M, Suzuki T, Dohmae N, Inoue Y, Ikeuchi M. "Absence of the PsbZ subunit prevents association of PsbK and Ycf12 with the PSII complex in the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1." Plant Cell Physiol. 2007 48(12):1758-63. [pubmed]
  313. Masuda A, Baba T, Dohmae N, Yamamura M, Wada H, Ushida K. "Mucin (qniumucin), a glycoprotein from jellyfish, and determination of its main chain structure." J Nat Prod. 2007 70(7):1089-92. [pubmed]
  314. Nakanishi K, Dohmae N, Morishima N. "Endoplasmic reticulum stress increases myofiber formation in vitro." FASEB J. 2007 21(11):2994-3003. [pubmed]
  315. Linge A, Morishima N, Kasper M, Barth K. "Bleomycin induces caveolin-1 and -2 expression in epithelial lung cancer A549 cells." Anticancer Res. 2007 27(3A):1343-51. [pubmed]
  316. Kim SH, Miyatake H, Hisano T, Iwasaki W, Ebihara A, Miki K. "Crystallization and preliminary X-ray analysis of the oxygenase component (HpaB) of 4-hydroxyphenylacetate 3-monooxygenase from Thermus thermophilus HB8." Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 63(Pt 7):556-59. [pubmed]
  317. Simizu S, Suzuki T, Muroi M, Lai NS, Takagi S, Dohmae N, Osada H. "Involvement of disulfide bond formation in the activation of heparanase." Cancer Res. 2007 67(16):7841-49. [pubmed]
  318. Pick E, Lau OS, Tsuge T, Menon S, Tong Y, Dohmae N, Plafker SM, Deng XW, Wei N. "Mammalian DET1 regulates Cul4A activity and forms stable complexes with E2 ubiquitin-conjugating enzymes." Mol Cell Biol. 2007 27(13):4708-19. [pubmed]
  319. Torigoe H, Dohmae N, Hanaoka F, Furukawa A. "Mutational analyses of a single-stranded telomeric DNA binding domain of fission yeast pot1: conflict with X-ray crystallographic structure." Biosci Biotechnol Biochem. 2007 71(2):481-90. [pubmed]
  320. Sato Y, Shirakawa R, Horiuchi H, Dohmae N, Fukai S, Nureki O. "Asymmetric coiled-coil structure with Guanine nucleotide exchange activity." Structure. 2007 15(2):245-52. [pubmed]
  321. Manya H, Suzuki T, Akasaka-Manya K, Ishida HK, Mizuno M, Suzuki Y, Inazu T, Dohmae N, Endo T. "Regulation of mammalian protein O-mannosylation: preferential amino acid sequence for O-mannose modification." J Biol Chem. 2007 282(28):20200-06. [pubmed]
  322. Umehara M, Ogita S, Sasamoto H, Koshino H, Nakamura Takemichi, Asami Tadao, Yoshida Shigeo, Kamada H, "Identification of a factor that complementarily inhibits somatic embryogenesis with vanillyl benzyl ether in Japanese larch" In Vitro Cellular Developmental Biology Plant. 2007 43(3):203-08. [pdf]
  323. Hongo Yayoi, Nakamura Takemichi, Sato Akihiro, "Electron capture dissociation of triantennary complex-type N-glycosylated peptides: a case of suppressed peptide backbone cleavage" Journal of the Mass Spectrometry Society of Japan. 2007 55(2):77-82. [pdf]
  324. Hongo Yayoi, Sato Akihiro, Nakamura Takemichi, "Factors governing peptide backbone cleavages in electron capture dissociation of triantennary complex-type N-glycosylated peptide" Journal of the Mass Spectrometry Society of Japan. 2007 55(4):279-285. [pdf]

    325. 2006

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  325. Kodama K, Fukuzawa S, Sakamoto K, Nakayama H, Kigawa T, Yabuki T, Matsuda N, Shirouzu M, Takio K, Tachibana K, Yokoyama S. "A new protein engineering approach combining chemistry and biology, part I; site-specific incorporation of 4-iodo-L-phenylalanine in vitro by using misacylated suppressor tRNAPhe." Chembiochem. 2006 7(10):1577-81. [pubmed]
  326. Masuda M, Dohmae N, Nonaka T, Oikawa T, Hisanaga S, Goedert M, Hasegawa M. "Cysteine misincorporation in bacterially expressed human alpha-synuclein." FEBS Lett. 2006 580(7):1775-79. [pubmed]
  327. Kakuda N, Funamoto S, Yagishita S, Takami M, Osawa S, Dohmae N, Ihara Y. "Equimolar production of amyloid beta-protein and amyloid precursor protein intracellular domain from beta-carboxyl-terminal fragment by gamma-secretase." J Biol Chem. 2006 281(21):14776-86. [pubmed]
  328. Takayasu S, Sakurai T, Iwasaki S, Teranishi H, Yamanaka A, Williams SC, Iguchi H, Kawasawa YI, Ikeda Y, Sakakibara I, Ohno K, Ioka RX, Murakami S, Dohmae N, Xie J, Suda T, Motoike T, Ohuchi T, Yanagisawa M, Sakai J. "A neuropeptide ligand of the G protein-coupled receptor GPR103 regulates feeding, behavioral arousal, and blood pressure in mice." Proc Natl Acad Sci U S A. 2006 103(19):7438-43. [pubmed]
  329. Kaku H, Nishizawa Y, Ishii-Minami N, Akimoto-Tomiyama C, Dohmae N, Takio K, Minami E, Shibuya N. "Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor." Proc Natl Acad Sci U S A. 2006 103(29):11086-91. [pubmed]
  330. Dreanno C, Matsumura K, Dohmae N, Takio K, Hirota H, Kirby RR, Clare AS. "An alpha2-macroglobulin-like protein is the cue to gregarious settlement of the barnacle Balanus amphitrite." Proc Natl Acad Sci U S A. 2006 103(39):14396-401. [pubmed]
  331. Ito Y, Nakanomyo I, Motose H, Iwamoto K, Sawa S, Dohmae N, Fukuda H. "Dodeca-CLE peptides as suppressors of plant stem cell differentiation." Science. 2006 313(5788):842-45. [pubmed]
  332. Takarada H, Kawano Y, Hashimoto K, Nakayama H, Ueda S, Yohda M, Kamiya N, Dohmae N, Maeda M, Odaka M. "Mutational study on alphaGln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771." Biosci Biotechnol Biochem. 2006 70(4):881-89. [pubmed]
  333. Nagatsuka Y, Horibata Y, Yamazaki Y, Kinoshita M, Shinoda Y, Hashikawa T, Koshino H, Nakamura T, Hirabayashi Y. "Phosphatidylglucoside exists as a single molecular species with saturated fatty acyl chains in developing astroglial membranes." Biochemistry. 2006 45(29):8742-50. [pubmed]
  334. Katayama Y, Hashimoto K, Nakayama H, Mino H, Nojiri M, Ono TA, Nyunoya H, Yohda M, Takio K, Odaka M. "Thiocyanate hydrolase is a cobalt-containing metalloenzyme with a cysteine-sulfinic acid ligand." J Am Chem Soc. 2006 128(3):728-29. [pubmed]
  335. Kodama K, Fukuzawa S, Nakayama H, Kigawa T, Sakamoto K, Yabuki T, Matsuda N, Shirouzu M, Takio K, Tachibana K, Yokoyama S. "Regioselective carbon-carbon bond formation in proteins with palladium catalysis; new protein chemistry by organometallic chemistry." Chembiochem. 2006 7(1):134-39. [pubmed]
  336. Tomo Tatsuya, Suzuki Takehiro, Hirano Emi, Tsuchiya Tohru, Miyashita Hideaki, Dohmae Naoshi, Mimuro Mamoru, "Reversible absorption change of chlorophyll {\it d} in solutions" Chemical Physics Letters. 2006 423(4-6):282-287 [link]
  337. Kataoka S, Arakawa T, Hori S, Katayama Y, Hara Y, Matsushita Y, Nakayama H, Yohda M, Nyunoya H, Dohmae N, Maeda M, Odaka M. "Functional expression of thiocyanate hydrolase is promoted by its activator protein, P15K." FEBS Letter. 2006 580(19):4667-72. [pubmed]

    338. 2005

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  338. Nagumo Y, Kakeya H, Shoji M, Hayashi Y, Dohmae N, Osada H. "Epolactaene binds human Hsp60 Cys442 resulting in the inhibition of chaperone activity." Biochem J. 2005 387(Pt 3):835-40. [pubmed]
  339. Nakai Y, Shiratsuchi A, Manaka J, Nakayama H, Takio K, Zhang JT, Suganuma T, Nakanishi Y. "Externalization and recognition by macrophages of large subunit of eukaryotic translation initiation factor 3 in apoptotic cells." Exp Cell Res. 2005 309(1):137-48. [pubmed]
  340. Aoki K, Suzui N, Fujimaki S, Dohmae N, Yonekura-Sakakibara K, Fujiwara T, Hayashi H, Yamaya T, Sakakibara H. "Destination-selective long-distance movement of phloem proteins." Plant Cell. 2005 17(6):1801-14. [pubmed]
  341. Nakanishi K, Sudo T, Morishima N. "Endoplasmic reticulum stress signaling transmitted by ATF6 mediates apoptosis during muscle development." J Cell Biol. 2005 169(4):555-60. [pubmed]
  342. Morishima N. "Control of cell fate by Hsp70: more than an evanescent meeting." J Biochem. 2005 137(4):449-53. [pubmed]

    343. 2004

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  343. Taoka M, Yamauchi Y, Shinkawa T, Kaji H, Motohashi W, Nakayama H, Takahashi N, Isobe T. "Only a small subset of the horizontally transferred chromosomal genes in Escherichia coli are translated into proteins." Mol Cell Proteomics. 2004 3(8):780-87. [pubmed]
  344. Iwata H, Kaibara M, Dohmae N, Takio K, Himeno R, Kawakami S. "Purification, identification, and characterization of elastase on erythrocyte membrane as factor IX-activating enzyme." Biochem Biophys Res Commun. 2004 316(1):65-70. [pubmed]
  345. Ishida M, Dohmae N, Shiro Y, Oku T, Iizuka T, Isogai Y. "Design and synthesis of de novo cytochromes c." Biochemistry. 2004 43(30):9823-33. [pubmed]
  346. Tomita T, Mizumachi Y, Chong K, Ogawa K, Konishi N, Sugawara-Tomita N, Dohmae N, Hashimoto Y, Takio K. "Protein sequence analysis, cloning, and expression of flammutoxin, a pore-forming cytolysin from Flammulina velutipes. Maturation of dimeric precursor to monomeric active form by carboxyl-terminal truncation." J Biol Chem. 2004 279(52):54161-72. [pubmed]
  347. Watanabe A, Hong WK, Dohmae N, Takio K, Morishima-Kawashima M, Ihara Y. "Molecular aging of tau: disulfide-independent aggregation and non-enzymatic degradation in vitro and in vivo." J Neurochem. 2004 90(6):1302-11. [pubmed]
  348. Kanai Y, Dohmae N, Hirokawa N. "Kinesin transports RNA: isolation and characterization of an RNA-transporting granule." Neuron. 2004 43(4):513-25. [pubmed]
  349. Aihara H, Nakagawa T, Yasui K, Ohta T, Hirose S, Dhomae N, Takio K, Kaneko M, Takeshima Y, Muramatsu M, Ito T. "Nucleosomal histone kinase-1 phosphorylates H2A Thr 119 during mitosis in the early Drosophila embryo." Genes Dev. 2004 18(8):877-88. [pubmed]
  350. Hirose H, Arasaki K, Dohmae N, Takio K, Hatsuzawa K, Nagahama M, Tani K, Yamamoto A, Tohyama M, Tagaya M. "Implication of ZW10 in membrane trafficking between the endoplasmic reticulum and Golgi." EMBO J. 2004 23(6):1267-78. [pubmed]
  351. Tohri A, Dohmae N, Suzuki T, Ohta H, Inoue Y, Enami I. "Identification of domains on the extrinsic 23 kDa protein possibly involved in electrostatic interaction with the extrinsic 33 kDa protein in spinach photosystem II." Eur J Biochem. 2004 271(5):962-71. [pubmed]
  352. Usui T, Kazami S, Dohmae N, Mashimo Y, Kondo H, Tsuda M, Terasaki AG, Ohashi K, Kobayashi J, Osada H. "Amphidinolide h, a potent cytotoxic macrolide, covalently binds on actin subdomain 4 and stabilizes actin filament." Chem Biol. 2004 11(9):1269-77. [pubmed]
  353. Shibata M, Ishii J, Koizumi H, Shibata N, Dohmae N, Takio K, Adachi H, Tsujimoto M, Arai H. "Type F scavenger receptor SREC-I interacts with advillin, a member of the gelsolin/villin family, and induces neurite-like outgrowth." J Biol Chem. 2004 279(38):40084-90. [pubmed]
  354. Nakamura T, Dohmae N, Takio K. "Characterization of a digested protein complex with quantitative aspects: an approach based on accurate mass chromatographic analysis with Fourier transform-ion cyclotron resonance mass spectrometry." Proteomics. 2004 4(9):2558-66. [pubmed]
  355. Usui T, Watanabe H, Nakayama H, Tada Y, Kanoh N, Kondoh M, Asao T, Takio K, Watanabe H, Nishikawa K, Kitahara T, Osada H. "The anticancer natural product pironetin selectively targets Lys352 of alpha-tubulin." Chem Biol. 2004 11(6):799-806. [pubmed]
  356. Kanki T, Nakayama H, Sasaki N, Takio K, Alam TI, Hamasaki N, Kang D. "Mitochondrial nucleoid and transcription factor A." Ann N Y Acad Sci. 2004 1011:61-68. [pubmed]
  357. Sengoku T, Nureki O, Dohmae N, Nakamura A, Yokoyama S. "Crystallization and preliminary X-ray analysis of the helicase domains of Vasa complexed with RNA and an ATP analogue." Acta Crystallogr D Biol Crystallogr. 2004 60(Pt 2):320-22. [pubmed]
  358. Kurasawa Y, Earnshaw WC, Mochizuki Y, Dohmae N, Todokoro K. "Essential roles of KIF4 and its binding partner PRC1 in organized central spindle midzone formation." EMBO J. 2004 23(16):3237-48. [pubmed]

    359. 2003

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  359. Hoshino M, Dohmae N, Takio K, Kanazawa I, Nukina N. "Identification of a novel amino-terminal fragment of amyloid precursor protein in mouse neuroblastoma Neuro2a cell." Neurosci Lett. 2003 353(2):135-38. [pubmed]
  360. Sato T, Dohmae N, Qi Y, Kakuda N, Misonou H, Mitsumori R, Maruyama H, Koo EH, Haass C, Takio K, Morishima-Kawashima M, Ishiura S, Ihara Y. "Potential link between amyloid beta-protein 42 and C-terminal fragment gamma 49-99 of beta-amyloid precursor protein." J Biol Chem. 2003 278(27):24294-301. [pubmed]
  361. Korekane H, Taguchi T, Sakamoto Y, Honke K, Dohmae N, Salminen H, Toivonen S, Helin J, Takio K, Renkonen O, Taniguchi N. "Purification and cDNA cloning of UDP-GlcNAc:GlcNAcbeta1-3Galbeta1-4Glc(NAc)-R [GlcNAc to Gal]beta1,6N-acetylglucosaminyltransferase from rat small intestine: a major carrier of dIGnT activity in rat small intestine." Glycobiology. 2003 13(5):387-400. [pubmed]
  362. Seko A, Dohmae N, Takio K, Yamashita K. "Beta 1,4-galactosyltransferase (beta 4GalT)-IV is specific for GlcNAc 6-O-sulfate. Beta 4GalT-IV acts on keratan sulfate-related glycans and a precursor glycan of 6-sulfosialyl-Lewis X." J Biol Chem. 2003 278(11):9150-58. [pubmed]
  363. Ishida M, Dohmae N, Shiro Y, Isogai Y. "Synthesis of biotinylated heme and its application to panning heme-binding proteins." Anal Biochem. 2003 321(1):138-41. [pubmed]
  364. Woo SH, Kimura M, Higa-Nishiyama A, Dohmae N, Hamamoto H, Jong SK, Yamaguchi I. "Proteome analysis of wheat lemma." Biosci Biotechnol Biochem. 2003 67(11):2486-91. [pubmed]
  365. Tsujimura M, Odaka M, Nakayama H, Dohmae N, Koshino H, Asami T, Hoshino M, Takio K, Yoshida S, Maeda M, Endo I. "A novel inhibitor for Fe-type nitrile hydratase: 2-cyano-2-propyl hydroperoxide." J Am Chem Soc. 2003 125(38):11532-38. [pubmed]
  366. Tanioka T, Hattori A, Masuda S, Nomura Y, Nakayama H, Mizutani S, Tsujimoto M. "Human leukocyte-derived arginine aminopeptidase. The third member of the oxytocinase subfamily of aminopeptidases." J Biol Chem. 2003 278(34):32275-83. [pubmed]
  367. Rajesh S, Nietlispach D, Nakayama H, Takio K, Laue ED, Shibata T, Ito Y. "A novel method for the biosynthesis of deuterated proteins with selective protonation at the aromatic rings of Phe, Tyr and Trp." J Biomol NMR. 2003 27(1):81-86. [pubmed]
  368. Kitazume S, Tachida Y, Oka R, Kotani N, Ogawa K, Suzuki M, Dohmae N, Takio K, Saido TC, Hashimoto Y. "Characterization of alpha 2,6-sialyltransferase cleavage by Alzheimer's beta -secretase (BACE1)." J Biol Chem. 2003 278(17):14865-71. [pubmed]
  369. Park YS, Koh YH, Takahashi M, Miyamoto Y, Suzuki K, Dohmae N, Takio K, Honke K, Taniguchi N. "Identification of the binding site of methylglyoxal on glutathione peroxidase: methylglyoxal inhibits glutathione peroxidase activity via binding to glutathione binding sites Arg 184 and 185." Free Radic Res. 2003 37(2):205-11. [pubmed]

    370. 2002

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  370. Yoshikawa N, Dhomae N, Takio K, Abe H. "Purification, properties, and partial amino acid sequences of alanine racemase from the muscle of the black tiger prawn Penaeus monodon." Comp Biochem Physiol B Biochem Mol Biol. 2002 133(3):445-53. [pubmed]
  371. Nureki O, Shirouzu M, Hashimoto K, Ishitani R, Terada T, Tamakoshi M, Oshima T, Chijimatsu M, Takio K, Vassylyev DG, Shibata T, Inoue Y, Kuramitsu S, Yokoyama S. "An enzyme with a deep trefoil knot for the active-site architecture." Acta Crystallogr D Biol Crystallogr. 2002 58(Pt 7):1129-37. [pubmed]
  372. Ueda K, Usui T, Nakayama H, Ueki M, Takio K, Ubukata M, Osada H. "4-isoavenaciolide covalently binds and inhibits VHR, a dual-specificity phosphatase." FEBS Lett. 2002 525(1-3):48-52. [pubmed]
  373. Poltronieri P, Cappello MS, Dohmae N, Conti A, Fortunato D, Pastorello EA, Ortolani C, Zacheo G. "Identification and characterisation of the IgE-binding proteins 2S albumin and conglutin gamma in almond (Prunus dulcis) seeds." Int Arch Allergy Immunol. 2002 128(2):97-104. [pubmed]
  374. Saito T, Dohmae N, Tsujimoto M, Takio K. "PCR cloning and heterologous expression of cDNA encoding a peptidyl-Lys metalloendopeptidase precursor of Grifola frondosa." J Gen Appl Microbiol. 2002 48(5):287-92. [pubmed]
  375. Mitsui K, Nakayama H, Akagi T, Nekooki M, Ohtawa K, Takio K, Hashikawa T, Nukina N. "Purification of polyglutamine aggregates and identification of elongation factor-1alpha and heat shock protein 84 as aggregate-interacting proteins." J Neurosci. 2002 22(21):9267-77. [pubmed]
  376. Manya H, Inomata M, Fujimori T, Dohmae N, Sato Y, Takio K, Nabeshima Y, Endo T. "Klotho protein deficiency leads to overactivation of mu-calpain." J Biol Chem. 2002 277(38):35503-08. [pubmed]
  377. Umezu-Goto M, Kishi Y, Taira A, Hama K, Dohmae N, Takio K, Yamori T, Mills GB, Inoue K, Aoki J, Arai H. "Autotaxin has lysophospholipase D activity leading to tumor cell growth and motility by lysophosphatidic acid production." J Cell Biol. 2002 158(2):227-33. [pubmed]
  378. Sugawara K, Dohmae N, Kasai K, Saido-Sakanaka H, Okamoto S, Takio K, Ochi K. "Isolation and identification of novel ADP-ribosylated proteins from Streptomyces coelicolor A3(2)." Biosci Biotechnol Biochem. 2002 66(10):2292-96. [pubmed]
  379. Kubota K, Sakikawa C, Katsumata M, Nakamura T, Wakabayashi K. "PDGF BB purified from osteoclasts acts as osteoblastogenesis inhibitory factor (OBIF)." J Biomol Tech. 2002 13(2):62-71. [pubmed]
  380. Uchida A, Sugasawa K, Masutani C, Dohmae N, Araki M, Yokoi M, Ohkuma Y, Hanaoka F. "The carboxy-terminal domain of the XPC protein plays a crucial role in nucleotide excision repair through interactions with transcription factor IIH." DNA Repair (Amst). 2002 1(6):449-61. [pubmed]
  381. Sakamoto K, Hayashi A, Sakamoto A, Kiga D, Nakayama H, Soma A, Kobayashi T, Kitabatake M, Takio K, Saito K, Shirouzu M, Hirao I, Yokoyama S. "Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells." Nucleic Acids Res. 2002 30(21):4692-99. [pubmed]
  382. Kiga D, Sakamoto K, Kodama K, Kigawa T, Matsuda T, Yabuki T, Shirouzu M, Harada Y, Nakayama H, Takio K, Hasegawa Y, Endo Y, Hirao I, Yokoyama S. "An engineered Escherichia coli tyrosyl-tRNA synthetase for site-specific incorporation of an unnatural amino acid into proteins in eukaryotic translation and its application in a wheat germ cell-free system." Proc Natl Acad Sci U S A. 2002 99(15):9715-20. [pubmed]
  383. Hashimoto T, Wakabayashi T, Watanabe A, Kowa H, Hosoda R, Nakamura A, Kanazawa I, Arai T, Takio K, Mann DM, Iwatsubo T. "CLAC: a novel Alzheimer amyloid plaque component derived from a transmembrane precursor, CLAC-P/collagen type XXV." EMBO J. 2002 21(7):1524-34. [pubmed]
  384. Fujiwara H, Hasegawa M, Dohmae N, Kawashima A, Masliah E, Goldberg MS, Shen J, Takio K, Iwatsubo T. "alpha-Synuclein is phosphorylated in synucleinopathy lesions." Nat Cell Biol. 2002 4(2):160-64. [pubmed]
  385. Hirao I, Ohtsuki T, Fujiwara T, Mitsui T, Yokogawa T, Okuni T, Nakayama H, Takio K, Yabuki T, Kigawa T, Kodama K, Yokogawa T, Nishikawa K, Yokoyama S. "An unnatural base pair for incorporating amino acid analogs into proteins." Nat Biotechnol. 2002 20(2):177-82. [pubmed]
  386. Fukumoto Ryo-hei, Dohmae Naoshi, Takio Koji, Satoh Shinobu, Fujii Tadashi, Sekimoto Hiroyuki, "Purification and characterization of a pheromone that induces sexual cell division in the unicellular green alga {\it Closterium ehrenbergii}" Plant Physiology and Biochemistry 2002. 40(2):183-188. [link]
  387. Akashi Satoko, Takio Koji, "Melittin-diacylphosphatidylcholine interaction examined by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry" Journal of the Mass Spectrometry Society of Japan. 2002 50:67-71. [link]

    388. 2001

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  388. Natsume T, Nakayama H, Isobe T. "BIA-MS-MS: biomolecular interaction analysis for functional proteomics." Trends Biotechnol. 2001 19(10 Suppl):S28-33. [pubmed]
  389. Minagawa J, Han KC, Dohmae N, Takio K, Inoue Y. "Molecular characterization and gene expression of lhcb5 gene encoding CP26 in the light-harvesting complex II of Chlamydomonas reinhardtii." Plant Mol Biol. 2001 46(3):277-87. [pubmed]
  390. Akashi S, Takio K. "Structure of melittin bound to phospholipid micelles studied using hydrogen-deuterium exchange and electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry." J Am Soc Mass Spectrom. 2001 12(12):1247-53. [pubmed]
  391. Takeda M, Dohmae N, Takio K, Arai K, Watanabe S. "Cell cycle-dependent interaction of Mad2 with conserved Box1/2 region of human granulocyte-macrophage colony-stimulating factor receptor common betac." J Biol Chem. 2001 276(45):41803-09. [pubmed]
  392. Suzuki Y, Imai Y, Nakayama H, Takahashi K, Takio K, Takahashi R. "A serine protease, HtrA2, is released from the mitochondria and interacts with XIAP, inducing cell death." Mol Cell. 2001 8(3):613-21. [pubmed]
  393. Gu Y, Misonou H, Sato T, Dohmae N, Takio K, Ihara Y. "Distinct intramembrane cleavage of the beta-amyloid precursor protein family resembling gamma-secretase-like cleavage of Notch." J Biol Chem. 2001 276(38):35235-38. [pubmed]
  394. Raj VS, Tomitori H, Yoshida M, Apirakaramwong A, Kashiwagi K, Takio K, Ishihama A, Igarashi K. "Properties of a revertant of Escherichia coli viable in the presence of spermidine accumulation: increase in L-glycerol 3-phosphate." J Bacteriol. 2001 183(15):4493-98. [pubmed]
  395. Ishimura R, Yoshida K, Kimura H, Dohmae N, Takio K, Ogawa T, Tanaka S, Shiota K. "Stage-specific modification of G protein beta subunits in rat placenta." Mol Cell Endocrinol. 2001 174(1-2):77-89. [pubmed]
  396. Kato K, Kishi T, Kamachi T, Akisada M, Oka T, Midorikawa R, Takio K, Dohmae N, Bird PI, Sun J, Scott F, Miyake Y, Yamamoto K, Machida A, Tanaka T, Matsumoto K, Shibata M, Shiosaka S. "Serine proteinase inhibitor 3 and murinoglobulin I are potent inhibitors of neuropsin in adult mouse brain." J Biol Chem. 2001 276(18):14562-71. [pubmed]
  397. Shibata N, Arita M, Misaki Y, Dohmae N, Takio K, Ono T, Inoue K, Arai H. "Supernatant protein factor, which stimulates the conversion of squalene to lanosterol, is a cytosolic squalene transfer protein and enhances cholesterol biosynthesis." Proc Natl Acad Sci U S A. 2001 98(5):2244-49. [pubmed]
  398. Shimada A, Nureki O, Dohmae N, Takio K, Yokoyama S. "Gene cloning, expression, crystallization and preliminary X-ray analysis of Thermus thermophilus arginyl-tRNA synthetase." Acta Crystallogr D Biol Crystallogr. 2001 57(pt 2):272-75. [pubmed]
  399. Nakayama Hiroshi, "Protein functional analysis using liquid chromatography-tandem mass spectrometry in post-genomic era" Chromatography. 2001 22:201-207. [PDF]
  400. Akasi Satoko, Nakayama Hiroshi, Dohmae Naoshi, Takio Koji, "Utility of mass spectrometry in protein science" RIKEN Review. 2001 41:38-40. [PDF]