Marta Kulik

EDUCATION

2017: Ph.D. (Chemistry) Laboratory of Crystalochemistry, Faculty of Chemistry and Centre of New Technologies, University of Warsaw, Poland
2011: B.A. (Chemistry) Laboratory of Radiochemistry, Faculty of Chemistry, University of Warsaw, Poland
2010: M.S. (Environmental Protection) Faculty of Biology and Faculty of Mathematics, Informatics and Mechanics (graduated with honours degree), University of Warsaw, Poland

RESEARCH AND TEACHING EXPERIENCE

2017 -: Postdoctoral Researcher, RIKEN Theoretical Molecular Science Laboratory, Japan
2016 - 2017: JSPS Postdoctoral Fellow, RIKEN Theoretical Molecular Science Laboratory, Japan
2011 - 2016: Teaching assistance at Faculty of Chemistry, University of Warsaw, Poland (Identification of Organic Compounds, Physics A, Computer Science)

FELLOWSHIPS/SCHOLARSHIPS

AWARDS

2015: Best Short Talk Award, Computational Advances in Structure-Based Drug Discovery, Lausanne, Switzerland
2015: Contributed Talk, 8th Symposium of the Polish Bioinformatics Society, Lublin, Poland
2015: Best Poster Award, Biomolecules and Nanostructures 5, Jaroszowice, Poland
2015: Conference Grant, 19th Annual International Conference on Research in Computational Molecular Biology, Warsaw, Poland
2014: Conference Grant for a PhD Student, IV EURO WG Conference on Operational Research in Computational Biology, Bioinformatics and Medicine, Poznan, Poland
2014: Contributed Talk Award, From Computational Biophysics to Systems Biology, Gdansk, Poland
2013: Conference Grant for a PhD Student, Computer Aided Drug Design, Gordon conference, Mount Snow, USA
2013: Best Poster Award, JCF Frühjahrssymposium, Berlin, Germany
2011: Best Bachelor Thesis in Nuclear Chemistry Award (Canberra Packard Sp. z o.o.)

INTERNSHIPS

CURRENT RESEARCH PROJECTS

Replica Exchange Molecular Dynamics and Replica Exchange with Solute Tempering of nucleic acids
Flexible Fitting of structures to Cryo-EM density

PUBLICATIONS

Peer Review Articles

Acceleration of cryo-EM Flexible Fitting for Large Biomolecular Systems by Efficient Space Partitioning.
T. Mori, M. Kulik, O. Miyashita, J. Jung, F. Tama, Y. Sugita
Structure, 27, 161-174 (2019).
Molecular mechanisms for dynamic regulation of N1 riboswitch by aminoglycosides.
M. Kulik, T. Mori, Y. Sugita, J. Trylska
Nucleic Acids Research, 46, 9960-9970 (2018).
Interactions of 2'-O-methyl Oligoribonucleotides with the RNA Models of the 30S Subunit A-site.
M. Jasiński, M. Kulik, M. Wojciechowska, R. Stolarski, J. Trylska
PLoS ONE,13, e0191138 (2018).
Helix 69 of Escherichia coli 23S ribosomal RNA as a peptide nucleic acid target.
M. Kulik, A. Markowska-Zagrajek, M. Wojciechowska, R. Grzela, T. Wituła, J. Trylska
Biochimie,138, 32-42 (2017)
Structural and energetic comparison of the complexes of aminoglycosides with the model of the ribosomal A-site.
M. Kulik, J. Trylska
RAIRO-Oper. Res,50, 375-386 (2016)
Interactions of aminoglycoside antibiotics with rRNA.
J. Trylska, M. Kulik
Biochem. Soc. Trans., 4, 987-993. (2016)
Electrostatic Interactions in Aminoglycoside-RNA Complexes.
M. Kulik, A. M. Goral, M. Jasiński, P. M. Dominiak, J. Trylska
Biophysical Journal, 108, 655-665, (2015) Publication featured on the front cover of the Journal.
Bis(L-serinium) oxalate dihydrate: polymorph II.
M. Kulik, A. Pazio, K. Wozniak
Acta Cryst., E69, o1667–o1668 (2013).

Theoretical Molecular Science Laboratory